PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 333aa    MW: 36465.7 Da    PI: 7.7308
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022863.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.62.4e-31116327155374
        GRAS 155 keeleetgerLakfAeelgvpfefnvl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                    l++ +e L++   +l+vpf fnv+  + +r++  ++ +L +++g al++++ lqlhrl ++  ++++                    +qea hn+ 
  Do022863.1 116 DSFLSRAAELLTQEVVRLDVPFVFNVVrsHIDRFSGSDIAALGIEHGQALVISSTLQLHRLIADVITTTN----------------TATQHQEAHHNGL 198
                 5567888999****************98778899999************************955555555................34679******** PP

        GRAS 252 sFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                 s+ +r+ +a+ yys+lf+ l   ++ +es +r+ +Er +l++ei+++va  ga+rrerhe++ +W  r+ ++GFk +p s +  ++   l+ + + +d 
  Do022863.1 199 SLWNRVNNAFGYYSVLFNDLeVCGVLPESANRRAIERLVLREEIMDIVARDGAARRERHEKVVRWVPRMLHCGFKLAPASMDGFMETTKLVDRLSdNDK 297
                 ********************545789999*************************************************************999995554 PP

        GRAS 349 ....yrveeesgslvlgWkdrpLvsvSaWr 374
                     yrv++e+g ++ + ++ p++svS+W+
  Do022863.1 298 lkphYRVQKENGFFFVYSSSTPMFSVSVWK 327
                 7888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.3161302IPR005202Transcription factor GRAS
PfamPF035148.2E-29116327IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASPVSNNKG KAVLKEVAVV EDVMPPPAVF VQGHGTSVPL EVGSTSSAPD RAPMEGAPTE  60
VGHPAMAAPV IHPRSMSHQL NKAPIFQVRS IMKNCIAALV NGNIVGANSA LACEQDSFLS  120
RAAELLTQEV VRLDVPFVFN VVRSHIDRFS GSDIAALGIE HGQALVISST LQLHRLIADV  180
ITTTNTATQH QEAHHNGLSL WNRVNNAFGY YSVLFNDLEV CGVLPESANR RAIERLVLRE  240
EIMDIVARDG AARRERHEKV VRWVPRMLHC GFKLAPASMD GFMETTKLVD RLSDNDKLKP  300
HYRVQKENGF FFVYSSSTPM FSVSVWKPAG NQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649505.13e-80PREDICTED: scarecrow-like protein 3
TrEMBLK7UJ493e-80K7UJ49_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM5G889326_P018e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-21RGA-like 2