PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 310aa    MW: 33195.1 Da    PI: 6.2372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021915.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-45151521128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 lppGfrF+Ptdeel+++yL++k+++  +++  +++evdiy++ePwdL p+      +e+   yfF++r+ k ++g r+nrat++gyWk+tgkdk+vl++
  Do021915.1  15 LPPGFRFRPTDEELLTHYLAPKAADAGFTAPGAVREVDIYRAEPWDLlPAgggGGGGEDGGGYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDKAVLRQ 113
                 79****************************999**************544333222244477************************************8 PP

         NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g   g+kktLvfy+grap+g +t+Wvmheyrl
  Do021915.1 114 qqhgrgGGDPAGVKKTLVFYRGRAPTGDRTNWVMHEYRL 152
                 6665555555***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5212180IPR003441NAC domain
PROSITE profilePS5100552.38315180IPR003441NAC domain
PfamPF023651.4E-2716152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGGDDGRLRA PAGPLPPGFR FRPTDEELLT HYLAPKAADA GFTAPGAVRE VDIYRAEPWD  60
LLPAGGGGGG GEDGGGYFFC RRSVKFPSGL RTNRATRAGY WKSTGKDKAV LRQQQHGRGG  120
GDPAGVKKTL VFYRGRAPTG DRTNWVMHEY RLAQGHGYTT SPVLATGAQS EWVICRMFMK  180
KPPGETSSQL EQEAVLHPPL GDHLQPSVDG CHRDGGGKTP APAAAASDSD HTSCFSDTAL  240
AMAQGGNGIE GMLPLNHEEL LMTNCSSVAD FALASSPKAT QLRDELAADS FDFLPQLLDY  300
EAFPFILQDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-381518117166NO APICAL MERISTEM PROTEIN
1ut4_B2e-381518117166NO APICAL MERISTEM PROTEIN
1ut7_A2e-381518117166NO APICAL MERISTEM PROTEIN
1ut7_B2e-381518117166NO APICAL MERISTEM PROTEIN
3swm_A2e-381518120169NAC domain-containing protein 19
3swm_B2e-381518120169NAC domain-containing protein 19
3swm_C2e-381518120169NAC domain-containing protein 19
3swm_D2e-381518120169NAC domain-containing protein 19
3swp_A2e-381518120169NAC domain-containing protein 19
3swp_B2e-381518120169NAC domain-containing protein 19
3swp_C2e-381518120169NAC domain-containing protein 19
3swp_D2e-381518120169NAC domain-containing protein 19
3ulx_A2e-381518515173Stress-induced transcription factor NAC1
4dul_A2e-381518117166NAC domain-containing protein 19
4dul_B2e-381518117166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462370.11e-117hypothetical protein SORBIDRAFT_02g024530
TrEMBLC5XC891e-117C5XC89_SORBI; Putative uncharacterized protein Sb02g024530
STRINGSb02g024530.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.24e-56NAC domain containing protein 80