PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020438.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 812aa    MW: 88864.5 Da    PI: 6.3326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020438.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182785357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Do020438.1 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                5678****************************************************996 PP

2START41.82.8e-14165260296
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                 +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+      g  g+++l ++
  Do020438.1 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYM 260
                 789999****************************************************7777777777.********99999888888866665554 PP

3START607.4e-20262345125205
                 EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                 ++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+++ +l+++++
  Do020438.1 262 VCERSLSGSGGGPNaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLRQ 345
                 56677776666666666889*******************************************************999998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17885IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.3E-152490IPR001356Homeobox domain
SuperFamilySSF466898.98E-162688IPR009057Homeodomain-like
CDDcd000861.19E-152787No hitNo description
PfamPF000466.0E-162885IPR001356Homeobox domain
CDDcd146863.61E-679118No hitNo description
SuperFamilySSF559617.83E-23164348No hitNo description
SMARTSM002349.2E-11164346IPR002913START domain
PfamPF018524.0E-11165260IPR002913START domain
PfamPF018522.9E-17262345IPR002913START domain
PROSITE profilePS5084812.082262355IPR002913START domain
Gene3DG3DSA:3.30.530.209.4E-5274320IPR023393START-like domain
PfamPF086702.0E-50669811IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLSIAEETF TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYM QVCERSLSGS GGGPNAASAQ QFVRAEMLPS GYLVRPCEGG  300
GSIVHIVDHL DLEAWSVPEV LRPLYESSRV VAQKMTTVAL RHLRQIAQET SGEVVYALGR  360
QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSL IGGDGIEDVV VACNSTKKIR NNGNAGITFG  420
APGGIICAKA SMLLQSVPPA VLVRFLREHR SEWADYNIDA YLASSLKASA CSLPGLRPMR  480
FSGGQMIMPL AHTVENEEIL EVVRLEGQSL THDEALLSRD IHLLQLCTGI DEKSVGSSFQ  540
LVFAPIDEHF PDDAPLISSG FRVIPLDMKT DGVSSGRTLD LASSLDVGSA APQASGDASP  600
ESCNLRSVLT IAFQFPYEMH LQDSVATMAR QYVRSVVSAV QRVSMAISPS QSGLNAGQRM  660
LSGFPEAATL ARWVCQSYHY HLGVELLNQS DEAGEALLKM LWHHPDAILC CSFKEKPMFT  720
FANKAGLDML ETSLVALQDL TLDKIFDESG RKALFSDISK LMEQGYVYLP SGVCMSGMGR  780
HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416850.0BT041685.2 Zea mays full-length cDNA clone ZM_BFb0031E09 mRNA, complete cds.
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468669.10.0homeobox-leucine zipper protein HOX10 isoform X2
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A1E5V2R50.0A0A1E5V2R5_9POAL; Homeobox-leucine zipper protein HOX10
STRINGSb01g050000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein