PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020402.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 373aa    MW: 39847.7 Da    PI: 5.3002
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020402.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.31.9e-3267166297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                 lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q ife+++ iW
  Do020402.1  67 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIARTIW 165
                 79*************************8867778***************************************88899********************* PP

      DUF573  97 g 97 
                 +
  Do020402.1 166 R 166
                 8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-3068165IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPN PNPVFSSPAA APASVSAAPA  60
AGERRPLFQR LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLHTGFTKN  120
QLVEKIRRLK RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHSRDSDDEG  180
GAAGNAHDAP FAIDAVAANG GESTKSPTSR PRRGRRRRTG DFPADAAPET LALPPAPMPL  240
MTEDALPAAF PQTAAMDGGV GVGGFSMDPA AGLPAALSAA AAATAVTGGA TAENPVLAAL  300
FKEMVRAMLS IGGGVSAAPL GLEPPPAIAG VPMEGEKWRQ QRIRELEVYL RRIDLLQDQA  360
RAALEELRSA PHT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645990.0BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBankEU9721160.0EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.10.0probable transcription factor At3g04930
TrEMBLA0A1E5VM570.0A0A1E5VM57_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-32DNA-binding storekeeper protein-related transcriptional regulator