PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020363.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 412aa    MW: 44419.9 Da    PI: 4.5367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020363.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-1962111255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Do020363.1  62 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 111
                 789******.7*********33....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.39E-3061118No hitNo description
Gene3DG3DSA:3.30.730.102.7E-2762118IPR001471AP2/ERF domain
PROSITE profilePS5103219.59962119IPR001471AP2/ERF domain
SMARTSM003808.7E-3562125IPR001471AP2/ERF domain
PfamPF008471.0E-1362111IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1962119IPR016177DNA-binding domain
PRINTSPR003676.1E-86374IPR001471AP2/ERF domain
PRINTSPR003676.1E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MALKRKASTG LTDDLMISYG DHSRASPALA TENSFVPAAA SRDQSWAEAV GAVAAAQRGR  60
KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GSNTRTNFWP  120
RAAGAAAPAE AAVTLQLQHP PPPPSALPSK VTNLLLLRLK KARSSAGAVT QAAPVQHQQA  180
QQGYGGQEEY SFQVDDFLSY DSTCDELQVV KRQEGSNCSQ ETEDDGDEEE DEEPLDFGFM  240
DKQPSPAREV DDAGLYSPFE MVAGELGGAA EVEPSAYGVE GPSEPPGAIN EVMKRMKYER  300
KISASFYALS GVSECLRLRL GDGIDHDGAR RNELALSGLR DACRKQQHHE QQKQEVVDEG  360
ANNVVGHEES SSCSNSVSSE ATSSSPEAAS SPQEAKAVDS DMWSSLDLPP IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13621181471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277046e-82KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986381.10.0ethylene-responsive transcription factor ESR1
TrEMBLA0A1E5V2Q10.0A0A1E5V2Q1_9POAL; Uncharacterized protein
STRINGSi038848m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11