PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020041.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 340aa    MW: 37636.6 Da    PI: 9.6457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020041.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12169213554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h   Er+RR+++N++f  L+++lP+a     +K +Ka+iL +A +Y++ L
  Do020041.1 169 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILMRARDYVNTL 213
                 7788*********************9.....7**************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.35E-17163232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12166218No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15168228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDMEEHGHAE APSSQSSTFR SFSGTPYETS SLMPASTNTT NSCHHAAEVS SLSLKTPLSP  60
VTYGDRHYGQ YCYGNVDTIP NLEEFTCQGE AHHERAQRRN GHGGAFMPYS RHLGTKKKPK  120
PGSGGQRAIK AAMSALARMH MVRLSQRQRY QMEMAAAPPT GSNGNQLRHV LSERKRREKL  180
NDSFKALKTV LPPAPKKDKA SILMRARDYV NTLKSRVSEL EERNRMLVEL QHHCNNGGDR  240
DDVSGEKIEI DINRATAGET SQKFQLKIVV RSGCNAMDAV VSILECLKEI GDVRLAAMDT  300
GSRATTLTLQ MKTSRSDDNC LKESVIRSIK GVMQSKIETA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.11e-164putative transcription factor bHLH041 isoform X1
TrEMBLA0A1E5UQ250.0A0A1E5UQ25_9POAL; Uncharacterized protein
STRINGPavir.J01638.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-23bHLH family protein