PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018652.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 221aa    MW: 22255.2 Da    PI: 7.9419
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018652.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.16.7e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv Gavg++ +++++l+q+++e+
  Do018652.1   2 SCNGCRVLRKGCSEACVLRPCLqwidgADAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVTGAVGLLGAGSWHLCQAAVET 100
                 6*********************9999777889****************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  Do018652.1 101 VLR 103
                 765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6551107IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDGAD AQGHATVFVA KFFGRAGLMS FLTAVPEPQR  60
PAVFQSLLYE AAGRTINPVT GAVGLLGAGS WHLCQAAVET VLRGGGIRPL PELDGGDGGL  120
HAADGSFAFT ARRAAGCSTF SAAKRATTAS AHVAVAGAPE PSCDLGLCLS PGSPPASGER  180
RPRRAGTPSM TSEESVTTTS GGGGGGGGGG GREPELLNLF V
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-127LOB domain-containing protein 37
SwissprotQ9FN112e-71LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1E5UZN81e-154A0A1E5UZN8_9POAL; LOB domain-containing protein 37
STRINGSi031011m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-66LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]