PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family BES1
Protein Properties Length: 472aa    MW: 48967.1 Da    PI: 9.4133
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017468.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82294.42.6e-292702693
      DUF822 26 aakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93
                aa i+ GLR++Gny lp+++DnneVlkALc+eAGw+ve+DGttyrk s p  +    + + a++   ss
  Do017468.1  2 AANIFRGLRENGNYFLPQHCDNNEVLKALCNEAGWIVEPDGTTYRKASPPVhQPVPPVHQPATVCSYSS 70
                89********************************************99999333333444444444444 PP

2DUF8221432.8e-441332362100
      DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.....eeaeaagssasaspesslq 95 
                 ++ r p+ +ErEnn++RE rRR  +a i+ GLR++Gny lp ++DnneVlkALc+eAGw+ve+DGttyr+g+kp+      +   +g sa ++p ss+ 
  Do017468.1 133 ATVRVPSLRERENNRLREQRRRLTTANIFRGLRENGNYMLPRHCDNNEVLKALCNEAGWIVEPDGTTYRQGCKPPsayrrISGVGIGGSAPVTPRSSYP 231
                 56799*********************************************************************9766544566778899999999988 PP

      DUF822  96 sslks 100
                  s+ +
  Do017468.1 232 VSPAA 236
                 55544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.5E-28271IPR008540BES1/BZR1 plant transcription factor, N-terminal
PfamPF056873.5E-42135245IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAANIFRGLR ENGNYFLPQH CDNNEVLKAL CNEAGWIVEP DGTTYRKASP PVHQPVPPVH  60
QPATVCSYSS RALSYREGTR EVIRGRMNGG KMGGGVAGAG AGGSSGGGGG GAGGGKGNGE  120
WNGNGNGKGK GKATVRVPSL RERENNRLRE QRRRLTTANI FRGLRENGNY MLPRHCDNNE  180
VLKALCNEAG WIVEPDGTTY RQGCKPPSAY RRISGVGIGG SAPVTPRSSY PVSPAAGYGL  240
SPGSSPSYPK LGGGGYGAAC GGEAGSSGLL PWMKKRPHGG DFSYPDYGKG SFTAPVTPQY  300
GSPLSRKLAR WAAENAATGA SSNVQPPWAG GAGLSRYAPQ QPVTMPPSPV NGGAAVDPVS  360
LLAGIQKAVA ANNNNNNAPA LGYNPFAAFG AGASSSRLRA PGPGQSSGGS RAPVARGSGD  420
MEMEEPYEFS FGRGGDEQYG AWEGEVTSED YVDEDSLELT LGNTKTRADR AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-181206392443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-181206392443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-181206392443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-181206392443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894GGKMGGG
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040704e-43AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBankAP0149584e-43AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-43CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819084.11e-78protein BZR1 homolog 4-like
SwissprotQ5Z9E55e-46BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A3L6QEY52e-83A0A3L6QEY5_PANMI; Uncharacterized protein
STRINGPavir.Aa02766.1.p5e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1866659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.19e-29BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]