PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016956.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 331aa    MW: 35765.8 Da    PI: 10.7701
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016956.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.5e-311332331100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  +++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae a+l+
  Do016956.1 133 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAgQRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAVLRAENAALR 231
                 7**********************************************99777779***************************************99998 PP

      DUF260  99 ee 100
                 ++
  Do016956.1 232 RQ 233
                 87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF070471.7E-393118IPR010754Optic atrophy 3-like
PROSITE profilePS5089120.175132234IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-27133230IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALPVAKLGT LALRTLSKPI ASRLKSQAAV HPKLRNFIVA IAQINHRITT KIQRRIYGHA  60
TDVEIRPLDE QKAVQAATDL IGEAFIFSVA VAALIFEVQR SARSEARKEE ARKQELERGR  120
TTGMTGGGNS GGACAVCKHQ RRKCEPNCEL AAYFPAHRMN DFRALHLVFG VANLTKLIKA  180
NATEAGQRRA AETLTWEARW RERDPSEGCY REVSCLRRDN AVLRAENAAL RRQLAEQQQL  240
LLWSRAGAAA PTASNNSTAA GCYNGNTSGN GLVAVRPPPH APAAQNMLGY RAVSVCPTAA  300
NGRKAAPDAA AVAMRGCGAD PSRDNRSNAA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-161292347111LOB family transfactor Ramosa2.1
5ly0_B3e-161292347111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732221e-150EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798343.11e-83LOB domain-containing protein 2-like
TrEMBLA0A1E5VAI40.0A0A1E5VAI4_9POAL; Uncharacterized protein
STRINGPavir.J05697.1.p4e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-22LOB domain-containing protein 2