PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016141.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 333aa    MW: 36111.4 Da    PI: 9.8657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016141.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17175208134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Do016141.1 175 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 208
                 *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.66E-13166209No hitNo description
SMARTSM004012.9E-19169221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268173205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.06E-15174206No hitNo description
PfamPF003202.4E-15175208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGEQD QGLFPAFHVT KDPPILFPFM INNPVDQLQG QSSYGDQHLR  60
QQVLAESTQQ FTDRMMMSGS DVFPRPLPFR PTIQSIDGDM IQRSAYDPYD IESKRADGST  120
SAWAVAPPTK MKIMRKSTSE YPEGGAARKP RRRSQAHQDE SQQLQQQAMG VVRVCSDCNT  180
TKTPLWRSGP CGPKSLCNAC GIRQRKARRA MAAAAAAAAS NGGAPQVASV AAQAKPAKKE  240
KRAYIDRSLP FKKRCKMVAV EHAVPAAKAT PAVAAPTKDQ DHVSSDKVAA TAMSLQSKVA  300
TPPPAMSFHA FPADEITDAA MLLMTLSCGL VRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016141.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-133CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VD770.0A0A1E5VD77_9POAL; Uncharacterized protein
STRINGSi019058m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-21cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]