PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 484aa    MW: 51587.7 Da    PI: 7.3125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015915.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.46.4e-87724731374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l +lLl+ + a +sgd ++a a+L ++  +as  g dp qR+aayf+ ALa+rl+r  s +++a pp++t+      e+ a+++f+++sP+++f+h+ta
  Do015915.1  72 LMHLLLTSVAAGESGDVHAAAAALHEVYRRASFGGgDPAQRVAAYFADALASRLLR--SPVAAASPPTPTR----GVEFLAYTMFYQASPLYQFAHFTA 164
                 5799****************************9999********************..7777777777776....56668899**************** PP

        GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg.................ppslRiTgvgspesgskeeleetgerLakfAeel.gvpfe 177
                 NqaI+ea+eg   + +H++Dfd+s+G+QWp+L+q+L++ ++                  p slRiTg+g     s++el++t+ rL++fA+ + +v+fe
  Do015915.1 165 NQAIVEAFEGGgrRSLHVVDFDVSYGFQWPSLIQSLSDAAAAatstsggahdgddyckePVSLRITGLGT----SADELRQTEARLTRFASGCpNVRFE 259
                 *********9877889********************9887444556678899999999677*********....9***************98769**** PP

        GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.......sFlerflealeyysalfd 269
                 f+ +v   +++ + e+++++ + +++Vnlv+   +    ++s++++  ++L  ++sl+P +v +ve+  + +s+       s+l  f+ +l+y++a+fd
  Do015915.1 260 FEGVVDGPINSCRHERIKTDDNATVVVNLVFPAAQSS--RTSTREQACSTLARIRSLNPSLVFLVEKGGSGSSNatsrgrsSLLPPFTASLRYFAAVFD 356
                 ***8777************************888886..555566679******************995443322355555****************** PP

        GRAS 270 sleaklpreseerikvErellgreivnvva.....cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrveee.sgs 357
                 sl++ lp++s er  +Er +lg ei+n+ a     + g+++ e+  + ++W+e++e+aGF+ ++ls+++++qaklll++ ++ g     +rv e   g 
  Do015915.1 357 SLHECLPADSGERLAIERNYLGVEISNAMAsldhnHGGDDHMEEPSSSASWKEMMESAGFEGAKLSSRTVSQAKLLLKMKSGCGgsgggFRVIEGdGGR 455
                 *****************************9444334678899***********************************9976332244669987661444 PP

        GRAS 358 lv.lgWkdrpLvsvSaWr 374
                 ++ lgW+d +L++++aWr
  Do015915.1 456 AMsLGWRDSALITTTAWR 473
                 456**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.77346446IPR005202Transcription factor GRAS
PfamPF035142.2E-8472473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNLTLSLAIN GGGTGTGKKR KVLDDDVGDG GDNCGRVMRL LQARERMMAR LELDDSRRVA  60
PDDDGGSGGL RLMHLLLTSV AAGESGDVHA AAAALHEVYR RASFGGGDPA QRVAAYFADA  120
LASRLLRSPV AAASPPTPTR GVEFLAYTMF YQASPLYQFA HFTANQAIVE AFEGGGRRSL  180
HVVDFDVSYG FQWPSLIQSL SDAAAAATST SGGAHDGDDY CKEPVSLRIT GLGTSADELR  240
QTEARLTRFA SGCPNVRFEF EGVVDGPINS CRHERIKTDD NATVVVNLVF PAAQSSRTST  300
REQACSTLAR IRSLNPSLVF LVEKGGSGSS NATSRGRSSL LPPFTASLRY FAAVFDSLHE  360
CLPADSGERL AIERNYLGVE ISNAMASLDH NHGGDDHMEE PSSSASWKEM MESAGFEGAK  420
LSSRTVSQAK LLLKMKSGCG GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSVS  480
KTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-36774738375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0PREDICTED: DELLA protein DWARF8-like
TrEMBLK3Y6Y10.0K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.15e-44GRAS family protein