PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014866.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 449aa    MW: 48361.5 Da    PI: 4.3338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014866.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093192212121
                 EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                 y C+ C+++F++ + +k+H +
  Do014866.1 192 YACESCSRTFNSYMAMKTHCK 212
                 89*****************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035540192212IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621192220IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-5192214No hitNo description
SuperFamilySSF576675.87E-5417442No hitNo description
SMARTSM003550.29422445IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198422449IPR007087Zinc finger, C2H2
PROSITE patternPS000280424445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEFKLQHWDD ESDEEVPLAI PLYPNADDHK STETESGLGK LAAPRPAATQ SSSLEETNDP  60
VKLQIDVGGS DDDESDEDYV DSEEGESIDD EDTSDEDDGE SSDEADDANF PMNAEDKNRP  120
AETPLKTTPG KKAKMTTPSK GNNTGSGIGA RSVYVHVATP YPSKQVKKGP LLLKKNAPST  180
SDRLKQPAAA GYACESCSRT FNSYMAMKTH CKIALQDDKG NEDVRVFVKV DGNEILIGTL  240
SVDKYPQYDE SDEEVPLAIP LYPNADDDKS KETKTGAEKP AATQFCKPKN TFEETKDPVK  300
LKADVGGATD DDDSDENSVD SEEGESGDDE DSSDEDGNES SDEDDGEDSL KNAMGKNRPA  360
EAPLRTPLAK KAKIATPSMG NKTGGGSTKK SGYVHVATPY PSSKQVKKTP LIIDSSKQPT  420
GYSCKSCSKT FHSSVGLDTH CKVKHDAHK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701520.18e-95PREDICTED: uncharacterized protein LOC101777617
TrEMBLK3XJV21e-103K3XJV2_SETIT; Uncharacterized protein
STRINGSi002175m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-09histone deacetylase 2C