PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 617aa    MW: 67319.9 Da    PI: 7.6369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014049.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12463509455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Do014049.1 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-4958243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15462513No hitNo description
SuperFamilySSF474591.23E-18462524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18463521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKMEIDDDGA VGGTGGTWTE EDRALGAAVL GTDAFAYLTK GGGAISEGLV ASSLPDDLQN  60
KLQELVESEG PGTGWNYAIF WQLSRTKSGD LVLGWGDGSC REPRDGEVGA AASAGSDDTK  120
QRMRKRVLQR LHMAFGVADE EDYAPGIDQV TDTEMFFLAS MYFAFPRRAG GPGQAFAAGI  180
PLWIPNNERK VFPANYCYRG FLANAAGFRT IVLVPFESGV LELGSMQHKA ESSDTIQNIR  240
SVFAGASGNK AAVQRHEGNG PTPPERSPGL AKIFGKDLNL GRPSAVPAVG VSKVDERSWE  300
QRSATGGTSL LPNVQKGLQN FTWSQARGLN SHQQKFGNGV LIVSNEATHR NNGAVDSPSA  360
AQFQLQKAPQ LQKLQLQKLP HIQKTPQLVN QQPLQPQVPR QIDFSAGSSS KSGVLVTRAA  420
VLDGETAEVD GLCKEEGPPP VIEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMETERE RFLESGMVDP RERAPRPEVD  540
IQVVQDEVLV RVMSPMESHP VKKVFQAFEE AEVRVGESKV TGNNNGTVVH SFIIKCPGAE  600
QQTREKVITA MSRAMNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-23562437192Transcription factor MYC3
4rqw_B2e-23562437192Transcription factor MYC3
4rs9_A2e-23562437192Transcription factor MYC3
4yz6_A2e-23562437192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967368.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_004967369.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
STRINGSi003963m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein