PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013815.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 127aa    MW: 14437.3 Da    PI: 10.954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013815.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.89.2e-32179355129
         NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 +++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v ++  +g l+g++ktLvfy+grap+g+ktdW+mheyrle
  Do013815.1  17 KSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGRDKAVRDSkhGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 93 
                 469************************************98777888****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.1441116IPR003441NAC domain
PfamPF023653.8E-16692IPR003441NAC domain
SuperFamilySSF1019414.45E-331898IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSSATLISTA LSHGIFKSDW YFFSYKDRKY PTGTRTNRAT LTGFWKATGR DKAVRDSKHG  60
GGLIGMRKTL VFYTGRAPNG RKTDWIMHEY RLETDENAAP QARPSRHMSL TSHSKHRCVH  120
VHALHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-25179270142NO APICAL MERISTEM PROTEIN
1ut4_B1e-25179270142NO APICAL MERISTEM PROTEIN
1ut7_A1e-25179270142NO APICAL MERISTEM PROTEIN
1ut7_B1e-25179270142NO APICAL MERISTEM PROTEIN
3swm_A1e-25179273145NAC domain-containing protein 19
3swm_B1e-25179273145NAC domain-containing protein 19
3swm_C1e-25179273145NAC domain-containing protein 19
3swm_D1e-25179273145NAC domain-containing protein 19
3swp_A1e-25179273145NAC domain-containing protein 19
3swp_B1e-25179273145NAC domain-containing protein 19
3swp_C1e-25179273145NAC domain-containing protein 19
3swp_D1e-25179273145NAC domain-containing protein 19
3ulx_A1e-25199270140Stress-induced transcription factor NAC1
4dul_A1e-25179270142NAC domain-containing protein 19
4dul_B1e-25179270142NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750861e-116KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661306.18e-56PREDICTED: NAC domain-containing protein 105-like
SwissprotO655082e-44NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A0K1TPD51e-56A0A0K1TPD5_PANVG; Secondary wall NAC master switch
TrEMBLK4AKP38e-57K4AKP3_SETIT; Uncharacterized protein
STRINGSi039467m2e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-45NAC domain containing protein 76