PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013581.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 439aa    MW: 49537.3 Da    PI: 7.9146
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013581.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.51.1e-35451871128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 
                 lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + 
  Do013581.1  45 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKGET 139
                 799************.99******999677544333..3444433445**********.555666799******************7566666443377 PP

         NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Do013581.1 140 RWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 187
                 8************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3939206IPR003441NAC domain
PROSITE profilePS5100534.12645206IPR003441NAC domain
PfamPF023653.1E-1646187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNRGHSSSSS KLINEKLEEH RISTAKHCPH CGEKIDSKPK DWVGLPAGVK FDPTDQELIE  60
HLEAKVKDEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT  120
GTRKRRKIQT ECDVHKGETR WHKTGKTRPV MVNGRQKGCK KILVLYTNFG KHRKPEKTNW  180
VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWSSDRSA AAAVAATTVQ EQRRRDSGSG  240
SCSSRDHEVS ATSFPAGYTV TAAVEMQQHM KQPADHFSFA PFRKTFDQEV GIGGDQVPSN  300
QLGRSEQHHA GQEQQQHRPV LATTAVPATA FLISRPSNPV STIVPPAMQH ASVVLDHDQF  360
HVPAILLHHH DKFQNMQQQH QHQQQQPQQK LDRRSAGLEE LIMGCTSSTG TKGETSIPQS  420
QETEWPYPYW PPDNQDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124318713140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170050.0KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660788.10.0PREDICTED: uncharacterized protein LOC101755562 isoform X1
TrEMBLA0A096SU660.0A0A096SU66_MAIZE; Uncharacterized protein
STRINGGRMZM2G166721_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-117NAC domain containing protein 75