PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012367.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 678aa    MW: 71563.9 Da    PI: 6.3468
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012367.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10281337155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Do012367.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 337
                 57*******************5444.2455535555.7799999*************98 PP

2AP249.88.6e-16380431155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Do012367.1 380 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 431
                 89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-14281347IPR016177DNA-binding domain
PfamPF008473.6E-8281337IPR001471AP2/ERF domain
CDDcd000184.44E-17281347No hitNo description
SMARTSM003805.8E-22282351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-11282346IPR001471AP2/ERF domain
PROSITE profilePS5103217.108282345IPR001471AP2/ERF domain
PRINTSPR003673.5E-6283294IPR001471AP2/ERF domain
CDDcd000181.63E-23380441No hitNo description
SuperFamilySSF541715.49E-18380441IPR016177DNA-binding domain
PfamPF008473.0E-10380431IPR001471AP2/ERF domain
PROSITE profilePS5103219.467381439IPR001471AP2/ERF domain
SMARTSM003808.1E-34381445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18381440IPR001471AP2/ERF domain
PRINTSPR003673.5E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASANNWLGF SLSGQDNPQT NHQDSSPAAA GIDISGASDF YGLPTQQGSD GHLGVPGLRD  60
DHASYGIMEA FNRGQQETQD WNMRGLDYNG GASELSMLVG SSGGGGSGKR AVEDSEPKLE  120
DFLGGNSFVS EQDQSGGYLF SGVPMASSTN SNSGSNTMEL SMIKTWLRNN QVPQPQAPAP  180
HQPQPEEMST DASASSFGCS DSLGRNGGTV AAGSSQSLAL SMSTGSHLPM VVAGGGSASG  240
AAASESTSSE NKRASGAMDS PSSAIEAVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT TTNFPISNYE KELEEMKHMT  360
RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTEEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA RRLKDAVDHV EAAGATIWRA  480
DMDGGVISQL ADAGMGAYAS YGHHGWPTIA FQQPSPLTVH YPYGQPSRGW CKPEQDAAVA  540
AAAHSLQDLQ QLHLGSAAHN FFQASSSSTV YNGGGTSAAG YQGLGGGGSS FLMPSSTVAA  600
DQGHSSTANQ GSTCSYGDDH QEAGKIIGYD AMVATAGGDP YAAARSGYQF SQGSGSTVSI  660
ARANGYSNNW SSPFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824559.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
SwissprotQ8LSN21e-130BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1E5VQ160.0A0A1E5VQ16_9POAL; AP2-like ethylene-responsive transcription factor PLT1
STRINGSi016558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-120AP2 family protein