PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 300aa    MW: 32560.2 Da    PI: 4.5918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012245.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08163187730
                 HHHHHHHHHHHHHHHHHHCTSCC.C CS
         HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                 ++ErrRR+r+N++++ Lr+++Pk +
  Do012245.1 163 MAERRRRKRLNDRLSMLRSVVPKiS 187
                 79*********************44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.607156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-7163202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6163188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.16E-4244272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNAMGDFFS PAAVTACTAA MDCSFQDRHQ PPPTVSVLPT  60
FTASYNQPPP PPPHPAAPGF DCLSEVYGAA AAFGGPNAAD YGSEMGFLDV IEPKAPLVEG  120
GLGVCKVEPG LAEGGGAFGA GAAQPATASK KKRVEGMPSK NLMAERRRRK RLNDRLSMLR  180
SVVPKISKEL LERIKLLQEE IDEQQQQQGE TPGVLSVFRE LNPNEMVARN TPKFDVERKE  240
GGETRVEIYC AAKPGLLLST VSTLENLGLD IQQCVVSCFN DFGMHASCSE VLCLCFFLEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150170KKRVEGMPSKNLMAERRRRKR
2164171ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0239861e-110BT023986.1 Zea mays clone EL01N0413D04 mRNA sequence.
GenBankBT0429111e-110BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635381e-110EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812035.11e-143transcription factor bHLH93-like
SwissprotQ9LSL15e-42BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1E5VVN40.0A0A1E5VVN4_9POAL; Transcription factor bHLH93
STRINGSb10g030470.11e-142(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-41beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]