PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010465.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24027.8 Da    PI: 7.5948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010465.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-241056248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                rien   rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+
  Do010465.1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 56
                8********************************************97 PP

2K-box27.71.1e-10911611786
       K-box  17 lqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                  +qe   L++ei+ Lq+ +R + G+  +  ++++eL+ Le+ Le  + +iRs K+ +l++  e lq+k  e
  Do010465.1  91 PKQETMVLQQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 161
                 5799999*****************998626************************************99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.352161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-27176IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-35160IPR002100Transcription factor, MADS-box
CDDcd002655.20E-39278No hitNo description
PRINTSPR004043.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.4988178IPR002487Transcription factor, K-box
PfamPF014863.3E-1290158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT  60
GTMEELIEKY KTASGEAALQ RDGGVEHRMD PKQETMVLQQ EINLLQKGLR YIYGNRANEH  120
MTVEELNALE RYLEIWMYNI RSAKEGMLKA ANEILQEKIV EQSGLLDVGM MVADQQNGHF  180
RTVPLIEEIT NPLTILSGYS NCRVSEMGYS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16170169MEF2C
5f28_B2e-16170169MEF2C
5f28_C2e-16170169MEF2C
5f28_D2e-16170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278961e-149KJ727896.1 Zea mays clone pUT5990 MADS transcription factor (MADS45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972486.11e-146MADS-box transcription factor 26
SwissprotA2YQK91e-134MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-134MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A1E5W8Q21e-155A0A1E5W8Q2_9POAL; MADS-box transcription factor 26
STRINGSi014419m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-52AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]