PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 655aa    MW: 68044 Da    PI: 6.4758
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010236.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11269325155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Do010236.1 269 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 325
                 57*******************4444.2455535555.779999**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-9269325IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-15269335IPR016177DNA-binding domain
CDDcd000181.02E-17269335No hitNo description
PROSITE profilePS5103217.385270333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-12270334IPR001471AP2/ERF domain
SMARTSM003804.0E-23270339IPR001471AP2/ERF domain
PRINTSPR003673.3E-6271282IPR001471AP2/ERF domain
PROSITE profilePS510329.559322392IPR001471AP2/ERF domain
SMARTSM003803.8E-5344398IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-5366394IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-6367393IPR001471AP2/ERF domain
PRINTSPR003673.3E-6374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQDLAPS GQTDSTLISA ATTDEVSGDV CFNIPQDWSM RGSELSALVA  60
EPKLEDFLGG ISFSEQHHKA NLNVIPSSSS TCYASSGATT GYHQLYHHPS SALHFADSIM  120
VASSAGVHDG GAMFSAATAN GGIGAASANG GSIGLSMIKN WLRSQPAPPP QPRVAAADGA  180
QAAQGLSLSM NMAGPQGAGM PLLAGERGRA PESVSTSAQG GAIAPRKEDS GGSGGAGTLV  240
AVSTDTGGSG ASAETAARKT VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK  300
GRQGGYDKEE KAARAYDLAA LKYWGPTTTT NFPVSNYEKE LEEMKHMTRQ EFVASLRRKS  360
SGFSRGTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILDSSALPIG SAAKRLKEAE  420
AAASAQHAGV VSYDVGRITS QLGDGSALAA YGAHYHAAAW PTIAFQPGAA GLYHPYAQPL  480
RGWCKQEQDH AVIAAAHNLQ ELHHLNLGAG AHDFFSAGQA AMHGLGSIDN ASLEHSTGSN  540
SVVYNGVGDS NGGSAGGGYM MPMSAAAATT TAVVSHEQVH ARAQQGDQDE ASKQAAQMGY  600
ESYLVNAEVA YGGGRMPSWT PASAPPVAAA ASSHDNMAGG VAHGGAQLFS VWNDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408923e-91AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682077.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1E5VW320.0A0A1E5VW32_9POAL; AP2-like ethylene-responsive transcription factor PLT2
STRINGSi000593m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-82AP2 family protein