PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 545aa    MW: 58517.1 Da    PI: 5.8615
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010198.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.8e-11134190155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Do010198.1 134 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 190
                 57*******************4444.2455535555.779999**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.05E-18134200No hitNo description
SuperFamilySSF541711.37E-14134200IPR016177DNA-binding domain
PfamPF008472.6E-8134190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-11135200IPR001471AP2/ERF domain
SMARTSM003801.5E-22135204IPR001471AP2/ERF domain
PROSITE profilePS5103217.122135198IPR001471AP2/ERF domain
PRINTSPR003672.5E-6136147IPR001471AP2/ERF domain
PROSITE profilePS5103210.626216296IPR001471AP2/ERF domain
SMARTSM003800.0011260302IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-5266298IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-6270297IPR001471AP2/ERF domain
PRINTSPR003672.5E-6278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGGSADD VLAPLPPRGD EAGAEPKLED FLGLQEPSTA AVAGRAFAGT  60
GASSIGLSMI KNWLRSQPAP APAGVDSMAL EATAAVSPEG SGTVADGSEG VGAVVEAAQQ  120
RKTAAVDTFG QRTSIYRGVT KHRWTGRYEA HLWDNSCRRE GQTRKGRQGG YDKEEKAARA  180
YDLAALKYWG TTTTTNFPMS NYEKELEEMK HMSRQEYVAS LRRHVWSKLC IFMELEIKSF  240
SNGLTLYIYW GTGKAVDFHV VPRFTEGLLG TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY  300
DVKSIIESSS LPVGGTTKRL KDVPDQSDMG MNGADSAGNM RATNLLTDGI GSYGPESYGY  360
SGWLPATMTP IPLQFSNGHG HSRLWCKPEQ DGAVVEAAHN LHHLQHFPAA GCTHNFFQSS  420
PIQDVTGVVD VPSPSVDSNA FLYSGGVSYH GAMSGGYAMP VATVVEGNPV VSGYGVEDAT  480
TSDLYGGRNL HYLSQGSPDP NTGKGDVYDQ QGVRYESWVP SVAVIPQKSA NVTVCHGTPL  540
FSVWK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ48e-88BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A1E5UT550.0A0A1E5UT55_9POAL; AP2-like ethylene-responsive transcription factor BBM2
STRINGSi028170m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.13e-85AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]