PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 330aa    MW: 36485.7 Da    PI: 6.5929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010111.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.88e-18112165356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Do010111.1 112 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 165
                 4568999**********************************************9 PP

2HD-ZIP_I/II128.33.2e-41111201191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e+
   Do010111.1 111 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALVSHNKKLQAEI 201
                  69**************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1890168IPR009057Homeodomain-like
SuperFamilySSF466891.84E-19102169IPR009057Homeodomain-like
PROSITE profilePS5007117.346107167IPR001356Homeobox domain
SMARTSM003891.3E-17110171IPR001356Homeobox domain
CDDcd000862.21E-16112168No hitNo description
PfamPF000463.2E-15112165IPR001356Homeobox domain
PRINTSPR000311.6E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5147163IPR000047Helix-turn-helix motif
PfamPF021834.3E-14167207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRPMASNGMA SSPSPFFPPN FLLQMQQTPP DHEPQEHHHH HHEHHLPPPL HPHHNPFLPS  60
SQCPSLQDFR GMAPMLGKRP MYGADVGGGD EVNGGGANED ELSDDGSQAG EKKRRLNVEQ  120
VRTLEKNFEL GNKLEPERKL QLARALGLQP RQVAIWFQNR RARWKTKQLE KDYDALKRQL  180
DAVKADNDAL VSHNKKLQAE ILALKGREAG SELINLNKET EASCSNRSEN SSEINLDISR  240
TPPSEGPLDP PPPHQHPGGG GGGMIPFYPS VSRPAGVDID QLLHSSSGPK MEQHSNGGVQ  300
PAETASFGNL LCGVDEPPPF WPWADHQHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664900.0EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285060.0KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-150HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A1E5VWB90.0A0A1E5VWB9_9POAL; Homeobox-leucine zipper protein HOX21
STRINGPavir.Ia04323.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-79HD-ZIP family protein