PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 360aa    MW: 40564.4 Da    PI: 6.1932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009957.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.3e-20113220197
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatg 87 
                 lp+G++F+P+d+el+++ L+k+ ++       ++++   ++e  +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++     + +W++tg
  Do009957.1 113 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRKINtedlaDVRWHKTG 210
                 799************998888755544455443332222333336**********.667778899******************74444666899***** PP

         NAM  88 kdkevlskkg 97 
                 k+k+v ++ +
  Do009957.1 211 KTKPVNNNCE 220
                 *****98644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534483.66E-51264IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF1019412.48E-2197218IPR003441NAC domain
PROSITE profilePS5100515.383113280IPR003441NAC domain
PfamPF023652.3E-5114217IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRTAHRYPN PTHRPPLPGF CRGLHAGAVS LLHWSGKGKP WDRLDVGRPC PLDAVWAKTT  60
WIIDSQRFAT KIKNASGSSD PSKQKWMSNP SKECPKCSHV IDNSDVVHQW PGLPKGVKFD  120
PSDQELLWHL LAKHGKSGIK PHPFIDEFIP TVEEDEGICY THPQKLPGVK QNGSVSHFFH  180
RTFKAYNTGT RKRRKINTED LADVRWHKTG KTKPVNNNCE IKIEENAAEE TFVPPPSEKP  240
EDGDNPQSQD PKLWEGDSQF ELLDSQQLAE GLAMCDEFLL SQSQTSCGGG DEPRAIKPRL  300
AVYAQLPAED FKKDLEECQW LEPSNDVNLE LDNTTEFRLS QIDFSQDSFT TWAGGKMIDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558620.0BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.11e-106PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK22e-80NAC8_ARATH; NAC domain-containing protein 8
TrEMBLB8A2S01e-104B8A2S0_MAIZE; Uncharacterized protein
TrEMBLC5Z8F21e-104C5Z8F2_SORBI; Putative uncharacterized protein Sb10g009670
STRINGSb10g009670.11e-104(Sorghum bicolor)
STRINGGRMZM2G027309_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-81NAC family protein