PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 231aa    MW: 24966 Da    PI: 7.5442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009837.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-142470354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+Y+++L
  Do009837.1 24 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRYVREL 70
                79*************************9.....7****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.91E-111971No hitNo description
SuperFamilySSF474593.93E-152079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-152173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5712170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-122470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-132776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVVTGDGEGE RPAPAPASRK ERGRSHSEAE RKRRQRINAH LATLRTLVPS ASRMDKAALL  60
GEVVRYVREL HGKASEATEG VSIGVIPGEG DEVGVEEEDD RWRHGGHYGA GGLGTDADAD  120
DRLRPRRVRA WVCCADRPGL MADLGRAVRS VGNARPVRAE IATVGGRTRG VLELDVCCDD  180
DDDVTAAGRA VELSTLRAAL HAVLLNREEE HLAAAEGCKR PRYTTRIAKV Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039178e-43AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149648e-43AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822447.11e-114transcription factor AIG1-like
TrEMBLA0A1E5VG521e-160A0A1E5VG52_9POAL; Uncharacterized protein
STRINGSi014356m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-18bHLH family protein