PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 461aa    MW: 48333.6 Da    PI: 9.9266
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008850.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1294.6e-40632132133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 
                  g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++                  +++++ +++ +s ++ +
  Do008850.1  63 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdasagfpshpasaagkeqQQTPPPDADGGSLQQDN 161
                 689*************************************************************88887766655555544422222333555555555 PP

         TCP  83 snsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                 ++++++++ + + +s+ s++s+ s+l+l++ esr kar+rarer++   r k
  Do008850.1 162 NHHHHQQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAACRDK 213
                 5666668888888*******************************98776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-4264209IPR005333Transcription factor, TCP
PROSITE profilePS5136931.85665123IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.487192213IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEAALGVGGG EGRNKRGRVK GAGAEPEAKR RALAAPAAAA LAVPSPWAQQ HPASRIYRVS  60
RASGGKDRHS KVYTAKGIRD RRVRLSVATA IQFYDLQDRL GYDQPSKAIE WLIKAAADAI  120
DKLPSLDASA GFPSHPASAA GKEQQQTPPP DADGGSLQQD NNHHHHQQQL TRSGCSSTSE  180
TSKGSVLSLS RSESRVKARE RARERSAAAC RDKDKDPADD AATGRRAAAA TTTSAQAASF  240
TELLTGMAAA SAAAASAAPA EHKQQPSSAP WQPMPVSATA DYIGFAQPRK AAGHPMAHSF  300
VSPAPHLGNI ASIAMAPAQH FGLASGAVTV ASGGGDGEPH GEMTQFSFLQ DHYMPVHAAP  360
ASGPAGDYNL NFSMSSGLVG VNSRGTLQSN SQPQISGHHH HHHQQQQLQR LSTPLDAPNI  420
PFLFSPAVAV ATPTTAESQF AAAFQLWNGF QHADMKEKGK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2770124155Putative transcription factor PCF6
5zkt_B6e-2770124155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396804.10.0transcription factor PCF6
TrEMBLA0A1E5W0K90.0A0A1E5W0K9_9POAL; Transcription factor PCF6
STRINGPavir.Ba03864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2