PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 182aa    MW: 20707.1 Da    PI: 8.605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007897.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-53121481128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eek..ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                 +ppGfrFhPt+eelv +yL++kv++++   +  ++i+evd+y++ePwdL++    k  +  +e+  ewyfFs +d+ky++g+r+nrat++g+Wkatg+d
  Do007897.1  12 VPPGFRFHPTEEELVGYYLARKVAASHksQTDLDIIQEVDLYRIEPWDLQErcssK--HggGEQaaEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRD 108
                 69********************9988854333478**************9535442..13433346********************************* PP

         NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 k+vls+ ++e++g++ktLvfykgrap+g+ktdW+mheyrl
  Do007897.1 109 KPVLSRsSREVIGMRKTLVFYKGRAPHGSKTDWIMHEYRL 148
                 *****977788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-529155IPR003441NAC domain
PROSITE profilePS5100553.06712173IPR003441NAC domain
PfamPF023653.2E-2813148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEQAAEEESC CVPPGFRFHP TEEELVGYYL ARKVAASHKS QTDLDIIQEV DLYRIEPWDL  60
QERCSSKHGG GEQAAEWYFF SYKDRKYPSG TRTNRATAAG FWKATGRDKP VLSRSSREVI  120
GMRKTLVFYK GRAPHGSKTD WIMHEYRLQL QANHHAPAQA STSSSQFTTI HSTTSQQCNK  180
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5021486140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340807e-89JN634080.1 Zea mays secondary wall NAC transcription factor 4 mRNA, complete cds.
GenBankBT0346787e-89BT034678.1 Zea mays full-length cDNA clone ZM_BFb0011B16 mRNA, complete cds.
GenBankKJ7276417e-89KJ727641.1 Zea mays clone pUT5568 NAC transcription factor (NAC103) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131327.11e-86secondary wall NAC transcription factor 4
RefseqXP_008667100.11e-86PREDICTED: secondary wall NAC transcription factor 4 isoform X1
SwissprotO655082e-72NAC76_ARATH; NAC domain-containing protein 76
TrEMBLB4FC401e-86B4FC40_MAIZE; NAC transcription factor
STRINGAC212859.3_FGP0083e-86(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.13e-72NAC domain containing protein 76