PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007543.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26352.1 Da    PI: 4.9444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007543.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1851106256
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Do007543.1  51 NSKRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                 67889**************8899********************************9 PP

2HD-ZIP_I/II121.54.3e-3952144293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+  L+++l+e
   Do007543.1  52 SKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQYDALHARVESLRQEKLGLAAQLDE 144
                  69****************9999******************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1840110IPR009057Homeodomain-like
PROSITE profilePS5007117.8847108IPR001356Homeobox domain
SMARTSM003895.4E-1649112IPR001356Homeobox domain
PfamPF000469.2E-1650106IPR001356Homeobox domain
CDDcd000862.83E-1653109No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1953115IPR009057Homeodomain-like
PRINTSPR000315.6E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000315.6E-788104IPR000047Helix-turn-helix motif
PfamPF021833.0E-15108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESGCQFMVA PPPRQCYDEG QFMHQLMMVG DHDPAGAGRG EGGGGSGGER NSKRRFTEEQ  60
VRSLETTFHA RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAALRAQ  120
YDALHARVES LRQEKLGLAA QLDELKGRLN GRQDQSGSSC EVNGAEADDR RNNSVVSCLA  180
EDDGAVTPAA VDTSEESAAV AAEYCYDHVA YGGGLPEQFC TTPDLWDGWP LLEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007543.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-137AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-137AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-137EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953290.11e-112homeobox-leucine zipper protein HOX24
SwissprotA2X7U14e-89HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1E5W7L41e-176A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24
STRINGSi018237m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-34homeobox 7