PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 306aa    MW: 34020.3 Da    PI: 6.4526
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006984.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.75.2e-134771125
     G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                kprl+WtpeLHerFv+av+qLGG++
  Do006984.1 47 KPRLKWTPELHERFVDAVHQLGGPD 71
                79*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-114572IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-74772IPR006447Myb domain, plants
PfamPF143792.6E-25104150IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYHHQQQLQN HSHFLSSRQT FPPERHLLLQ GGSIPADPGL VLSTDAKPRL KWTPELHERF  60
VDAVHQLGGP DMVGCTMAME KPPEGNGSPA SHLNLGTQTN KSVHIGEALQ MQIDVQRRLH  120
EQLEVQRHLQ LRIEAQGKYL QSVLEKAQET LAKQNAGSVG LETAKLQLSE LVSKVSTECL  180
QHAFTGFEEM EGSQMVQGHT MQLGDGSVDS CLTACDGSQK DQDILSISLS AHRGKKIGGM  240
AFDIQAKERG SEDLFLDKLS RTPPSHQERR ERDSFIMAAK LDLNINDTND GPQNCKKFDL  300
NGFNWT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006984.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9437120.0EU943712.1 Zea mays clone 1680873 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796515.10.0myb-related protein 2 isoform X1
SwissprotQ9SQQ93e-68PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1E5VB740.0A0A1E5VB74_9POAL; Myb-related protein 2
STRINGSi036390m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.25e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]