PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006929.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 416aa    MW: 45144.8 Da    PI: 5.9377
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006929.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.2e-1046101255
         AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV++++++gr++A+++d  +   g ++k+   g ++ ++ Aa+a++ a++k++g
  Do006929.1  46 AYRGVTRHRWTGRFEAHLWDK-DarSGsRNKKGKQGAYDDEDAAARAHDLAALKYWG 101
                 69******************4.445558775555599***99*************97 PP

2AP247.35e-15144195155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Do006929.1 144 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 195
                 89****99**********988422...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-1345111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-1046110IPR001471AP2/ERF domain
PROSITE profilePS5103217.92546109IPR001471AP2/ERF domain
PfamPF008476.0E-846101IPR001471AP2/ERF domain
SMARTSM003802.0E-1546115IPR001471AP2/ERF domain
PRINTSPR003671.9E-54758IPR001471AP2/ERF domain
CDDcd000182.99E-22144205No hitNo description
SuperFamilySSF541713.86E-17144205IPR016177DNA-binding domain
PfamPF008471.1E-9144194IPR001471AP2/ERF domain
PROSITE profilePS5103217.741145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17145203IPR001471AP2/ERF domain
SMARTSM003804.3E-26145209IPR001471AP2/ERF domain
PRINTSPR003671.9E-5185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAKPRREAAA DEDPSAAATG VVGKTKLKRA RKKSGPRESP SQRSSAYRGV TRHRWTGRFE  60
AHLWDKDARS GSRNKKGKQG AYDDEDAAAR AHDLAALKYW GLGTILNFPL SGYDEELKEM  120
EGQPREEYIG SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTYATQE  180
EAAVAYDIAA IEHRGLNAVT NFDISHYVNH WQRHRHGPGG DGLGATDGAA PIVPFQLPDD  240
LPDERPAAVG LDETTGAAGF HDGEDHLPHH ACPFLGDDDG QLLPGQVGPA AHHNVPTSSA  300
LDLLLQSLKF KEMMEQVTAA AMADSNSSSS PAAPVESSSS SSSSSPPLPL SPPPQQQPEF  360
SGGTPARCSF PDDVQTFFDF ENGSDMGLTY AEVDTFLFGD LSEYAAPMFL DCELDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698471e-169BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282111e-169KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3YHX30.0K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-70AP2 family protein