PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 822aa    MW: 89246 Da    PI: 6.0135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006873.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.7e-18563357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Do006873.1  5 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRRCREKQ 63
                6789*****************************************************97 PP

2START89.66.7e-291532792126
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+++l +++l
  Do006873.1 153 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGnnGTIELLYMQL 250
                 789*******************************************************.8888888888******************9*********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEE CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwviv 126
                 +a+ +l+p Rdf+ +Ry+  l +g++v+ 
  Do006873.1 251 YAPMTLAPaRDFWLLRYTSILDDGSLVVS 279
                 ********************999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.402164IPR001356Homeobox domain
SMARTSM003891.2E-14268IPR001356Homeobox domain
CDDcd000861.92E-15565No hitNo description
PfamPF000463.9E-16563IPR001356Homeobox domain
SuperFamilySSF466892.95E-16666IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-17763IPR009057Homeodomain-like
CDDcd146863.99E-65796No hitNo description
PROSITE profilePS5084813.087143278IPR002913START domain
SuperFamilySSF559617.28E-21144284No hitNo description
Gene3DG3DSA:3.30.530.201.8E-10150280IPR023393START-like domain
SMARTSM002347.1E-8152315IPR002913START domain
PfamPF018524.6E-26153279IPR002913START domain
PfamPF086703.2E-42647818IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRDCP VLANVDPKQI KVWFQNRRCR  60
EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYYRQQTQ SAGLATTDTS  120
CESVVTSGQQ NVVGAGQPQA QPRDASPAGL MSIAEETLTE FLSKATGTAV EWVQMPGMKP  180
GPDSIGIIAI SHGCAGVAAR ACGLVGMEPA KVAEILKDRP LWLRDCRSME VVNVLPAGNN  240
GTIELLYMQL YAPMTLAPAR DFWLLRYTSI LDDGSLVVSF YAGNIYSIIV RPLYESSAMV  300
AQKMSMAALR YLRQVAHEDT HSVITGWGRQ PTALRALSQK LTRGFNEALN GLADDGWSVI  360
ESDGVDDVCV SVNSSPSKVI NCNAAFNNGL PIVSSSVLCA KASMLLQDVS PPALLRFMRE  420
QRSQWADSNL DALFASAMKP NFCNLPMSRL GGFSGQVILP LAHTFDPEEF LEVIKLGNAS  480
TYQDALMHRD LFLLQMYNGV DENTVGTCSE LLFAPIDASF SDDSPLLPSG FRIIPIDSPL  540
DTSSPNCTLD LASTLEVGTP RSRIPGGGGS GKAACAGSKA VMTIAFQFAF ESHLQDSVAT  600
MARQYMRSII ASVQRIALAL SSSRLVPQVG GVSHAPAAAV ASPEAATLSR WICQSYRFHF  660
GAELIKSADA SECETGLKAL WHHASAILCC SLKVCSENCF GVARSGLLSS GLTQDYTSSM  720
QAMPVFTFAN QSGLDMLETT LVALQDITLE KVLGDXGRKN LCAELPGVVE QGFACIPGGL  780
CVSGLGRPVS YEKALAWKVL DDDSAAHCIC FMFVNWSFVS SM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816436.10.0homeobox-leucine zipper protein HOX29-like
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A1E5V3I00.0A0A1E5V3I0_9POAL; Homeobox-leucine zipper protein HOX29
STRINGPavir.Eb00113.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein