PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006755.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 32802.2 Da    PI: 4.4961
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006755.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-1988143256
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Do006755.1  88 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 143
                 77889**************98**********************************9 PP

2HD-ZIP_I/II118.73.2e-3889180292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++L++a+d+l + +++L +++++Lr+++ 
   Do006755.1  89 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLEQDFDRLRAAHDELLAGRDALLADNNRLRSQVI 180
                  69****************9999******************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1878147IPR009057Homeodomain-like
PROSITE profilePS5007118.05884145IPR001356Homeobox domain
SMARTSM003893.2E-1686149IPR001356Homeobox domain
CDDcd000864.09E-1588146No hitNo description
PfamPF000465.4E-1688143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-1994144IPR009057Homeodomain-like
PRINTSPR000313.2E-6116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000313.2E-6125141IPR000047Helix-turn-helix motif
PfamPF021832.6E-13145187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSGRNMISS AVPLRAAGEG GEHVFLFGGG GGGGFLRGAP VVEAGAADCR RKRPFQLTAH  60
EELQLQLELG DDELGGFDYE LHGGQQERTK RRLTAEQVRE LELSFEEEKR KLEPERKSEL  120
ARRLGIAPRQ VAVWFQNRRA RWKTKQLEQD FDRLRAAHDE LLAGRDALLA DNNRLRSQVI  180
TLSEKLQAKE SSALEPEEQP VALQAGAYAP FKQDQLCTET ATGGATPAVG YTGGASDSPE  240
SYLAGARSPP SSSEDDCGGG DGDGDGCAFF LPDPDALLAA AAAEEDGAQL NNWAWLWSEQ  300
QY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006755.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700031e-110BT070003.1 Zea mays full-length cDNA clone ZM_BFb0367A14 mRNA, complete cds.
GenBankKJ7275771e-110KJ727577.1 Zea mays clone pUT5437 HB transcription factor (HB34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959426.11e-128homeobox-leucine zipper protein HOX25
SwissprotA3BYC16e-78HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A1E5WAR00.0A0A1E5WAR0_9POAL; Homeobox-leucine zipper protein HOX25
STRINGSi030640m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-33homeobox 1