PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006617.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 331aa    MW: 34926.9 Da    PI: 6.3383
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006617.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.2e-294108199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                 +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p +e+r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e
  Do006617.1   4 SCNGCRVLRKGCTEACTIRPCLqwikaPDAQSNATVFLAKFYGRAGLLNLIDAAPgDEQRPAVFRSLLYEACGRIVNPIYGSVGLLWSGKWHLCQAAVE 102
                 6*************************999*************************62566***************************************9 PP

      DUF260  94 lallke 99 
                 ++l ++
  Do006617.1 103 AVLKGT 108
                 988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.373110IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTEACT IRPCLQWIKA PDAQSNATVF LAKFYGRAGL LNLIDAAPGD  60
EQRPAVFRSL LYEACGRIVN PIYGSVGLLW SGKWHLCQAA VEAVLKGTPI VQISSEDAEA  120
AAPSPAHLHK AAASCYDIRH VAKPLPPAAG ADAVAGALAP ASSAADAQSS KGGSSVLHKV  180
AKPGRTSFKK RASSSPSSKK QAHHSKLQAS AETEDDNRRR DEEEAHLQLL ADHALSDDTH  240
HHQEASEASL DTDAEVASHV TQAEQATVVE EEDHLQEQQQ QQHPGLDLTL GFGVFAPVAA  300
ASQPTPSADA GCSNGGWTAA EEPGVVGFRF L
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805937.11e-132nucleolin 1-like
TrEMBLA0A1E5VY000.0A0A1E5VY00_9POAL; LOB domain-containing protein 41
STRINGPavir.J00526.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-65LOB domain-containing protein 41