PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005733.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 465aa    MW: 48258.5 Da    PI: 6.1231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005733.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-053133333555
                 TS-STCHHHHHHHHHHHHHHH CS
         HLH  35 skKlsKaeiLekAveYIksLq 55 
                 s++ +Ka++Le+A+eY+k Lq
  Do005733.1 313 SERIDKASMLEEAIEYLKTLQ 333
                 7899****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-7311358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-5312341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-4313337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
TAPGDELAEL LWDNGPALRR APPPFQPFTC SAAGSSRAHE LKRHAAAGMG SVPLGLHDAV  60
GLAGLTVHDD DDDAVPWLHC PVVDDGDGDM APLPQEYCAG LLSEYSGLPA APPASHGAAV  120
PASRAAPPEA AEVNQAPPPS GEGVMNFTFF SRPLQRPQAS AAATATASNP VESTVVQAAT  180
NRLRSTPLFS EQRMAWLQPP KGPRATAAAA PPAPQARPLP PDHGHGEVAA VTQRRLQPEA  240
RAPDAAAATA VVTASSVCSG NGDRSQHKRS SHQQLADCSV SPDEDLDDEG GAMRRSAARS  300
NKRSRTAEVH NLSERIDKAS MLEEAIEYLK TLQLQVQMMS MGTGLCVPPM LLPAMQMPHP  360
MAHFPHLGMG LGFGMGAAAA FDMARVAVAH FPCPPMAMPP GPMFGVPGQA MPSPAAVFAH  420
MTGSGAAPAE QMEAAAAAPP ARRGSEADHP PAPVVAQELQ HPKQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005733.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376166e-39AC137616.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0069I13, complete sequence.
GenBankAC1376216e-39AC137621.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111O13, complete sequence.
GenBankAK2879586e-39AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
GenBankAP0149616e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805180.10.0transcription factor APG-like
SwissprotQ0JNI92e-72PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A1E5VFK20.0A0A1E5VFK2_9POAL; Transcription factor APG (Fragment)
STRINGPavir.Ca01237.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.38e-14bHLH family protein
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]