PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005721.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WOX
Protein Properties Length: 271aa    MW: 30171.6 Da    PI: 6.3192
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005721.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-2193153257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Do005721.1  93 RQRWQPTPMQLQILESIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 153
                 89*****************99**************************************97 PP

2Wus_type_Homeobox101.75.1e-3392155265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
         Do005721.1  92 ARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 155
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1788158IPR009057Homeodomain-like
PROSITE profilePS5007114.86889154IPR001356Homeobox domain
SMARTSM003893.0E-1491158IPR001356Homeobox domain
SuperFamilySSF466892.65E-1892156IPR009057Homeodomain-like
PfamPF000463.8E-1993153IPR001356Homeobox domain
CDDcd000861.47E-1493155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEWGDRAKAS AAAAAADERA GGGEGLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR  60
TLTEHQDSIA GMRFSNLYCD PLIIPGGHKI TARQRWQPTP MQLQILESIF DQGNGTPSKQ  120
KIKEITAELS HHGQISETNV YNWFQNRRAR SKRKQAASLP NNAESEAEVD EEALTDKKPK  180
SDGPLHENKA MSVHNADRIS GMHHFDTDHD QIGGMMFGSS DNGMRSSGNS GQMSFYDNIM  240
SNPRMDHFPG KVESSRSFSH LQHGEGFDMF G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639190.0BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456540.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM31e-135WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1E5V6G70.0A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRINGSb03g038080.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-62WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]