PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005544.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 1049aa    MW: 113469 Da    PI: 5.4736
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005544.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.34e-149589862755
     G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 A+Pk+i++lm+v+gLt+e+v+SHLQkYR+
  Do005544.1 958 AVPKSIVRLMNVEGLTRENVASHLQKYRI 986
                 9***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF079904.0E-149311717IPR012940Nucleic acid binding NABP
PROSITE profilePS5030369.423618985IPR033133Pumilio homology domain
CDDcd079209.13E-109688942IPR033712Pumilio, RNA binding domain
SuperFamilySSF483712.01E-78701941IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.1E-22701774IPR011989Armadillo-like helical
SMARTSM000251.5E-5718753IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030211.44718753IPR001313Pumilio RNA-binding repeat
PfamPF008065.0E-6719751IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.871754790IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0014754790IPR001313Pumilio RNA-binding repeat
PfamPF008063.0E-5757788IPR001313Pumilio RNA-binding repeat
Gene3DG3DSA:1.25.10.107.3E-67775941IPR011989Armadillo-like helical
SMARTSM000252.7E-7791826IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.904791826IPR001313Pumilio RNA-binding repeat
PfamPF008064.0E-9792824IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.117828863IPR001313Pumilio RNA-binding repeat
SMARTSM000251.1E-6828863IPR001313Pumilio RNA-binding repeat
PfamPF008063.1E-7829861IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.457864899IPR001313Pumilio RNA-binding repeat
SMARTSM000251.4E-5864899IPR001313Pumilio RNA-binding repeat
PfamPF008062.0E-4865894IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030211.067900941IPR001313Pumilio RNA-binding repeat
SMARTSM000252.6E-7906941IPR001313Pumilio RNA-binding repeat
PfamPF008066.2E-8914940IPR001313Pumilio RNA-binding repeat
SuperFamilySSF466893.58E-7956990IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-11957986IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.9E-14958990IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MGGGGGEEEP EDELDALLSS GAGGQRRRPV DAGERERERE LSVFRSGSAP PTIEGSLNAI  60
SGLLRGDGEA AVTAAPIPVA EASNGHGGLL SEEELRADPA YLKYYYSHGN LNPRLPPPVL  120
SKEDWRSTQR LKAGVVGGIG DRRKAGQEDV GQGMGTAVGR SLFSQHPGSE QEEETRSDGG  180
GAAEWVDGGG DGLIGLSLGR QRSFADILQT EPYLVSYGLF QDNIGRRTPT SEYPSRAASR  240
NSFLDNQEPV NSAENQYSMH TDILDAHHPV GNVQNVSGLH SLNASTSQTF ASILGSSVSR  300
NATPDPHYVA RVPSPGLPPV GVRITSNEKK LNCSSSPFNT VSSKAVGADD ILSALSSMNL  360
SKSGTLNGNN NISRSNFQRE TSDQQKFALD SQAGQVNKQH PVMLESDDEY LGIPSMSQPS  420
NSSFADVNKS VAGLAELRNS TNSRLDGHLE MQRSSTLSAR SYQKSPSSSN ESPGGSPAQH  480
QNFDSINSAF LNYGLTGYPL SPGLPSMMPP LFESAAAASA IASLGVDSRN LGNNILSSPT  540
LSLTDVHSLG LGGNQAPTGL QSPLSDPFYV QYLKSTQYAA QGAGSYGDPS LERGYMGSSY  600
ANLNAVQKAY IEALLQQQKQ YEMPLFGKST ASNHGYYGNL PYGMGMPYPG SPLGSPVASP  660
SGPGSPLRLG ERNVRFPSNL RNLGGWNTDP SGYMNENFPS SLLDEFKSNK ARSFELAEIA  720
GHVVEFSADQ YGSRFIQQKL ETATVEEKSM VFEEIMPNAL SLMTDVFGNY VVQKKCIECI  780
PEDSIQFIIS TFYGHVVPLS THPYGCRVIQ RVLEHCADPK TQQIVMDEIL QSVCMLAQDQ  840
YGNYVVQHVL EHGKPHERSI IIEKLAGQII QMSQQKFASN VVEKCLTFGG PTEREVLINE  900
MLGTTYENEP LQAMMKDQFG NYVVQKVLET CDDQQRELIL SRRGGLDFNH KILLDGGAVP  960
KSIVRLMNVE GLTRENVASH LQKYRIYLKR TRNPAAAQPP PPFPTAYSSP FNPQTPSDAS  1020
SRSGFRAFPS GYSEMLERDQ AVSSMGFKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bsb_A8e-687009483336Pumilio homolog 1
3bsb_B8e-687009483336Pumilio homolog 1
3bsx_A8e-687009483336Pumilio homolog 1
3bsx_B8e-687009483336Pumilio homolog 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970555.10.0pumilio homolog 2
TrEMBLA0A1E5WED90.0A0A1E5WED9_9POAL; Pumilio-like protein 2
STRINGPavir.Ea03364.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1412922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.32e-13G2-like family protein