PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005324.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 232aa    MW: 23564.5 Da    PI: 9.0496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005324.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-212273156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Do005324.1 22 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 73
                68********.**********83...36**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.30E-192280No hitNo description
PfamPF008471.2E-142272IPR001471AP2/ERF domain
SMARTSM003802.6E-352386IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-232380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-332381IPR001471AP2/ERF domain
PROSITE profilePS5103224.2892380IPR001471AP2/ERF domain
PRINTSPR003671.4E-112435IPR001471AP2/ERF domain
PRINTSPR003671.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPAAAATGL ALGVGGAGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL GTFDTAEEAA  60
RAYDAAAREY RGAKAKTNFP SFPSLSSPMP PAAAAATGGS RSSGSSAVES FGGDVQQAPM  120
QAMPLPTSLE LDLFHRAAAA GVGAGARFPF TSYPVTHPYY FFGQAAAAAT AAGCHMQLKL  180
APTVTVAALA QSDSDSSSVV DLSPSPPAAV STKKASAFHL DLNCPPPAEA EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-231980163ATERF1
3gcc_A6e-231980163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.13e-84ethylene-responsive transcription factor 4
SwissprotO803402e-35ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0A8XT594e-95A0A0A8XT59_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P019e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-18erf domain protein 9