PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family RAV
Protein Properties Length: 395aa    MW: 40982.5 Da    PI: 9.5979
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004006.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-1283131155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Do004006.1  83 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 131
                 78****9888.8*********......44**********99*************98 PP

2B395.82.8e-30218308184
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+k+ tpsdv+k++rlv+pk++ae+h        g +++++ l +ed +g++W+++++y+++s++yv tkGW++Fvk++gL++gD+v F+ 
  Do004006.1 218 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGETKGVLLNFEDAEGKVWRFRYSYWNSSQSYVXTKGWSRFVKEKGLQAGDVVGFYX 308
                 89*******************************5566899*************************************************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.12E-2283139No hitNo description
PfamPF008479.8E-883131IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-1683139IPR016177DNA-binding domain
PROSITE profilePS5103219.65184139IPR001471AP2/ERF domain
SMARTSM003801.1E-2484145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1984139IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-37210335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28216309IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-27216307No hitNo description
PROSITE profilePS5086313.366218327IPR003340B3 DNA binding domain
PfamPF023625.6E-27218308IPR003340B3 DNA binding domain
SMARTSM010194.8E-22218326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSASSLVED TSGGGASTDK LKELAAAAAS DGGPLERMGS GASAVVDATE PGAEADSGSA  60
PGSGGVAAAV GMGVGVGGKL PSSRYKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR  120
AYDVAAQRFR GRDAVTNFRP LADANPDAAV ELRFLASRSK AEVXDMLRKH TYFDELAQNK  180
RAFAAAAAAP TTTALASAHS SLSSPSPAAA AAAREHLFDK AVTPSDVGKL NRLVIPKQHA  240
EKHFPLQLPS AGGETKGVLL NFEDAEGKVW RFRYSYWNSS QSYVXTKGWS RFVKEKGLQA  300
GDVVGFYXSA PAAGADSKLF IACKLRPIPA SPASPVEPSP APVAKAVRLF GVDLLTAPAT  360
AAAPAEAMAG CKRARDLAAP PQAAFKKQLV ELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5021532611117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278700.0KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151105.10.0DNA-binding protein RAV1
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLB6TX040.0B6TX04_MAIZE; DNA-binding protein RAV1
STRINGGRMZM2G169654_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-94related to ABI3/VP1 1