PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003525.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 407aa    MW: 41991.8 Da    PI: 10.6783
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003525.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.65.5e-35862092124
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssgkaaksa 94 
                  g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai +l+ +  ++a ++      ea++ +++++      + + +
  Do003525.1  86 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIEKLPAL-DPAA-FAalpgpgEADAGKVKQQ------QGSRS 176
                 689*************************************************************.3333.223444332222222222......11122 PP

         TCP  95 akskksqksaasalnlak.esr..akararare 124
                   s+ s++s+ s l+l++ + r    a ar re
  Do003525.1 177 GGSSTSETSKGSELSLSRsDARggGGAAARDRE 209
                 223333333333355544333322333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3487215IPR005333Transcription factor, TCP
PROSITE profilePS5136932.36788146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSSSACGGRR TGWRPWATEQ RGRVARAXXX GAPPGRSQQG AKRVRGGGVR GSEAEAAGAA  60
AWGQPPALPP AQGPGAGSRI YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ  120
DRLGFDQPSK AIEWLINAAS DAIEKLPALD PAAFAALPGP GEADAGKVKQ QQGSRSGGSS  180
TSETSKGSEL SLSRSDARGG GGAAARDREV TVASTSAQAA SFTELLTGVA SAGAISPAEH  240
KQSWQQQSNV SAAAAADCVG IAHPGKGAHG LSTHAFSAPT AIKFGNAPPF GMVPAQPFNF  300
PSSVEMPHFS LGQDALAAPS SPAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHHHQQL  360
QRLDGPFLFG HAAAAAHPAS ENQLAASAAL QLWDGFRHSG MKEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2593147155Putative transcription factor PCF6
5zkt_B3e-2593147155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565950.0EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466344.10.0transcription factor PCF6
SwissprotQ10CE81e-114PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A3L6TG380.0A0A3L6TG38_PANMI; Uncharacterized protein
STRINGSb01g006020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-32TCP family protein