PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002533.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 865aa    MW: 93735.1 Da    PI: 7.1936
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002533.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-182481457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Do002533.1 24 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 81
                6789****************************************************97 PP

2START159.72.2e-501733802204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+ +  W ++++ +++l vi +g  g+++l+++++
  Do002533.1 173 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKGRSSWYRDCRHVDILHVIPTGngGTIELIYMQT 270
                 68999*****************************************************.8999999888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p     ++++Rae lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s  + ++
  Do002533.1 271 YALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnAPNFIRAEILPSGYLIRPCDGGGSMIYIVDHVDLNAKSVPEVLRPLYESPKILAQ 369
                 ******999****************************9887788******************************************************* PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  Do002533.1 370 KMTAAALRHIR 380
                 ******99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241882IPR001356Homeobox domain
SMARTSM003898.5E-152086IPR001356Homeobox domain
SuperFamilySSF466892.22E-162285IPR009057Homeodomain-like
CDDcd000861.63E-152383No hitNo description
PfamPF000469.8E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-182581IPR009057Homeodomain-like
CDDcd146862.44E-675114No hitNo description
PROSITE profilePS5084826.515163363IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-21171355IPR023393START-like domain
SMARTSM002342.3E-41172382IPR002913START domain
PfamPF018523.4E-48173380IPR002913START domain
SuperFamilySSF559612.2E-35173383No hitNo description
PfamPF086706.2E-20683784IPR013978MEKHLA
PfamPF086701.2E-12815864IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MAAVASRERL SPGAGAPQVD TGKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRDCPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSRLVYDN  120
GYMKNQLHSP SVATTDNSCE SVVTSGQHYQ QQNPAVPHPP QRDANNPAGL LAIAEETLAE  180
FMSKATGTAV NWVQMVGMKP GPDSVGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKGRS  240
SWYRDCRHVD ILHVIPTGNG GTIELIYMQT YALTTLAGPR DFWTLRYTSG LDDGSLVICE  300
RSLTQSTGGP CGPNAPNFIR AEILPSGYLI RPCDGGGSMI YIVDHVDLNA KSVPEVLRPL  360
YESPKILAQK MTAAALRHIR QIAHESSGEI PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP  420
DDGWSPFLSS DGPEDVTITV NSSPNKLVGS HVSPAPFFSA IGGGIMCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADPGVDA YSAASLRASP YAVPGLRAGG FMGNQVILPL ARTLEHEELC  540
SGVDENAPGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD DKMDMPSATR TLDLASALEV  600
GSATGSRDSS DASGTCTTRS VLTIAFQFSF ENHLRESVAA MARQYVRGVM ASVQRVAMAI  660
APSRLGAHIQ LKHPPGSPEA LALSTWIGRS YRVHTGTEIC WSDTEGADSP LMPFWKHSDA  720
ILSCSLKPPF MLKFANSAGF DILETTMVNI QDMPLEAVLD DEGRKALFSE LPKIMQQVLV  780
DQISVVPSSC FYLPIGGMMM KGIEGLKSGR VSSSRLQGLA YLPGGVCRSS MGRQASYEQA  840
VAWKVVGDDG APQGLALMLA NWTFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
GenBankHQ8587840.0HQ858784.1 Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963232.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A1E5VQZ50.0A0A1E5VQZ5_9POAL; Homeobox-leucine zipper protein HOX33
STRINGSi021201m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]