PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 450aa    MW: 48238.7 Da    PI: 5.3052
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002241.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-181564255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +ykGVr++k +grWv+eIr p     +   r++lg+++t+e+Aa a +aa  +l+g
  Do002241.1 15 KYKGVRRRK-WGRWVSEIRLP-----HsrERIWLGTYDTPEKAAMAFDAAYVCLRG 64
                8*****998.**********7.....335*************************98 PP

2AP226.41.7e-082733091655
         AP2  16 vAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 v+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  Do002241.1 273 VSEIRLPNS---RERIWLGSYDTPEKAARAFDAASVCLRG 309
                 689999833...5**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-261476IPR001471AP2/ERF domain
SMARTSM003805.0E-301580IPR001471AP2/ERF domain
CDDcd000182.51E-251576No hitNo description
SuperFamilySSF541717.85E-191576IPR016177DNA-binding domain
PfamPF008471.4E-101564IPR001471AP2/ERF domain
PROSITE profilePS5103221.8781574IPR001471AP2/ERF domain
PRINTSPR003674.8E-91627IPR001471AP2/ERF domain
PRINTSPR003674.8E-93854IPR001471AP2/ERF domain
PROSITE profilePS5103213.709258320IPR001471AP2/ERF domain
SMARTSM003805.5E-7269326IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-9273320IPR016177DNA-binding domain
CDDcd000182.49E-13273322No hitNo description
Gene3DG3DSA:3.30.730.101.1E-14273321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MQPNSGSSPS SGERKYKGVR RRKWGRWVSE IRLPHSRERI WLGTYDTPEK AAMAFDAAYV  60
CLRGPSDADG LNFPDSPPDV GRTSDPEEVY AAAVHHANRA AAAAMLYTMT TEPSSEPTQA  120
HGDGAPVEGS AMPAPALSPL QVSDESFDWL QLLADLPPLY SPPYVGSHAY HPPVLPTAAD  180
VNMEENESGS SPCLWSFDCS GAPSTDDHLP TKPLVEPSSH PAYDSARSHC SRFVSSRHVA  240
VVAAGAATAC AVAVGGDEVQ GRATAQAGRQ PLVSEIRLPN SRERIWLGSY DTPEKAARAF  300
DAASVCLRGP GGGTDGLNFP SSPPTFGRTS DREEVRAAAL WQANQSAATG EEAVTESSPS  360
ANDDGVPTER LATVPVPPDV LQVPPEIFDW SANPPPLTSP PAPTSRRRLR LRRPTTTWRR  420
MRVAGAMSFL ALILVNRDRV VIDPVDNEII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966650.16e-77ethylene-responsive transcription factor ERF018
TrEMBLA0A1E5V8Y30.0A0A1E5V8Y3_9POAL; Ethylene-responsive transcription factor ERF017
STRINGSi008104m3e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-30ERF family protein