PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 280aa    MW: 29017.1 Da    PI: 6.9412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002240.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-193180255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +grWv+eIr p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  Do002240.1 31 KYRGVRRRR-WGRWVSEIRRPNS---RERIWLGSFDTPEKAARAFDAALVCLRG 80
                8*****777.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-273190IPR001471AP2/ERF domain
SMARTSM003802.4E-313196IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-193190IPR016177DNA-binding domain
PfamPF008472.5E-113180IPR001471AP2/ERF domain
PROSITE profilePS5103222.9453190IPR001471AP2/ERF domain
CDDcd000183.65E-133190No hitNo description
PRINTSPR003676.2E-103243IPR001471AP2/ERF domain
PRINTSPR003676.2E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MPATGSSSST PAREREGARH AYAPSPLGQG KYRGVRRRRW GRWVSEIRRP NSRERIWLGS  60
FDTPEKAARA FDAALVCLRG PGAADGLNFP GSPPNVPRTS DSQEVCAASV SHANHNDDGG  120
APLELVAAVS RANGAVGAAT AAREASSAAT PGVSVESAAV PARPQVYAAA ASHAKQAAAG  180
ASIPTAAAPE AAAMTDPTTA HGRGLPVERV AVPAPLQVSL ERLDWSANLP PLYSPPTVTG  240
SHTYLPILTA AAPPDDLEEN DDHPCNCLWS FDSDGSCSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1429901272Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813238.12e-69ethylene-responsive transcription factor ABI4-like
TrEMBLA0A1E5V8Y20.0A0A1E5V8Y2_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-22ERF family protein