PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001523.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 362aa    MW: 37026.3 Da    PI: 5.5852
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001523.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.53.9e-3769171695
         TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg........ 88 
                  r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++                  ++ss+        
  Do001523.1  69 ARNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriP---------TQSSSsssspsal 158
                 6999********************************************************87777444322222221.........2222211112222 PP

         TCP  89 ......kaaksaa 95 
                       ++++++ 
  Do001523.1 159 amvdggEESPAKR 171
                 3344332222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38171125IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-3071164IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEAQAQDRAE EAEAARQHVG AGGVGVAAAA AAAAGMAMGA IPMHGFMVPK PEPVEYFGGM  60
AMVRSKPPAR NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP  120
AIIAATGTGT VPAIATTVDG VLRIPTQSSS SSSSPSALAM VDGGEESPAK RRRKLQPTRA  180
AAGASPLATA APAAYYPVIA DPLLQGTAGA AISVPSGLAP ITASGAPQGL VPVFAVPATG  240
SPVGGGGGSR MIPQATAVWM VPQPGAAAGG AAAQPAQFWA IQSAPQLINL AGAQAAAVFP  300
TAVNVADYQQ QQTMSHNSNS EQQHPGSGFH EQHRGGRGDV DHPEEDEDDD DEEPVSDSSP  360
EE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664491.31e-175transcription factor PCF2
SwissprotA2YXQ11e-151PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-151PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A1E5W1N50.0A0A1E5W1N5_9POAL; Transcription factor PCF2
STRINGPavir.Fa00111.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]