PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 122aa    MW: 12551.3 Da    PI: 8.0471
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001157.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer941.3e-293286358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 +vrY eC++NhAas+GghavDGC+Ef+++ geegt+aal+CaACgCHR+FHRr v+
   Do001157.1 32 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTTAALRCAACGCHRSFHRRVVQ 86
                 68**************************8.999********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576125No hitNo description
PfamPF047701.6E-293385IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-173486IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.1E-253483IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6453584IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MKRMVILRRC HPPPPPPPVL LGGGCCGGAG GGVRYGECRR NHAASMGGHA VDGCREFLAE  60
GEEGTTAALR CAACGCHRSF HRRVVQRCCC CLCCGADAAA ASAARWDDGC SPESSASSTT  120
PS
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656184e-80BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds.
GenBankEU9719694e-80EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321184.14e-50mini zinc finger protein 4
SwissprotQ0J5F83e-34MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A1E5VQB85e-80A0A1E5VQB8_9POAL; Mini zinc finger protein 4
STRINGGRMZM2G370863_P012e-40(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-24mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]