PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56297.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 423aa    MW: 47537.9 Da    PI: 5.0749
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56297.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+ +++++sws++g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF++++F +g+++ll++i+
    KZV56297.1  14 FLVKTYEMVDDPLTDSIVSWSHTGHSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KZV56297.1 102 RRK 104
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-369103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDASNGGSNS PAPFLVKTYE MVDDPLTDSI VSWSHTGHSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS GNGNTVPLSD  120
SERELFEKEI EKLQNEKLFL QSEVDRCENE NLEYKYQLRS LGQTLQTINQ RQQQLMAILA  180
QMLQKPGYAS SLLDEVEPHS KKRRLLALNY LHDEANLVEN QSTTLQENSS LPLLNNEVVE  240
KLDSSLTFWE KFLKEIGQTT SQNLHDFNVS SVPSLPSPVV ITEIPASSGD SDLSIPRSSP  300
ECQMGVSPSQ DHGASPELAT SSSFVDIPSI SSIHIDPDSS YKPSAIDVNM SPTKTIDTHT  360
SKDRNQGGRV PSLPVGGNDV FWQQFLTEAP GPSDSQEVQS ERRDLYNRTV LVGLQMNSSI  420
GGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-27310319129Heat shock factor protein 1
5d5v_B6e-27310319129Heat shock factor protein 1
5d5v_D6e-27310319129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098060.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A022QPW11e-158A0A022QPW1_ERYGU; Uncharacterized protein
STRINGVIT_12s0028g01410.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.17e-71HSF family protein