PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52637.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 75aa    MW: 8677.8 Da    PI: 9.7626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52637.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.5e-121054344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     rWT++E +l+ +a +++ ++   +W  Iar mg g+++ ++k ++
       KZV52637.1 10 RWTPQENKLFEKALARFDKDtpdRWQNIARAMGGGKSADEVKRHF 54
                     9*******************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.073662IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.7E-6658IPR009057Homeodomain-like
SMARTSM007171.6E-9760IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-13966IPR009057Homeodomain-like
PfamPF002493.4E-91054IPR001005SANT/Myb domain
CDDcd001679.47E-71054No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MASGSLSSTR WTPQENKLFE KALARFDKDT PDRWQNIARA MGGGKSADEV KRHFEILMED  60
LRRIESGYVP FPSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-27175174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52637.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582408.15e-40PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7D1S15e-49A0A2Z7D1S1_9LAMI; Protein RADIALIS-like 4
STRINGXP_009779120.13e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-30RAD-like 6