PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51765.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 467aa    MW: 51590.2 Da    PI: 7.0348
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51765.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17133182155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KZV51765.1 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182
                 78*******************......55************************998 PP

2AP242.81.3e-13224274155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a++k +g
  KZV51765.1 224 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAALKCNG 274
                 89********.7******...5...334336**********99**********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-16133192IPR016177DNA-binding domain
CDDcd000182.39E-12133192No hitNo description
PfamPF008472.1E-9133182IPR001471AP2/ERF domain
PROSITE profilePS5103217.82134190IPR001471AP2/ERF domain
SMARTSM003801.5E-31134196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-17134190IPR001471AP2/ERF domain
PfamPF008473.0E-9224274IPR001471AP2/ERF domain
CDDcd000184.90E-26224284No hitNo description
SuperFamilySSF541718.5E-17224283IPR016177DNA-binding domain
PROSITE profilePS5103215.58225282IPR001471AP2/ERF domain
SMARTSM003802.1E-31225288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-16225282IPR001471AP2/ERF domain
PRINTSPR003674.6E-6226237IPR001471AP2/ERF domain
PRINTSPR003674.6E-6264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLNLNLTIDQ IVDRAETLSG KLFMLSGDHL EYSGSSNSSV VNVETSSAAG DEDSSSNNLN  60
GFDIWRTNGE DEETEDRTGG YVMKDFFSAK AAPQCQLLDL SENYRELAGQ RVTTQQQRRQ  120
VKKSRRGPRP RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF  180
RGLDADINFN ISDYEDLKEM KDLTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR  240
MGQLLGKKYI YLGLFDSEIE AARAYDKAAL KCNGREAVTN FDPSTYGDQV NSEADIGAGQ  300
SHNLDLNLGI APPHGANCLT QSMGVGDTQL LGDSNNTLEN GQRIQNLFLT PGRSQLPHGY  360
LNASEPFPQN GINSSYDPIC QGSSLEKSME ACSSTNLTWR ITPGRPNEVP PPKPLLSTAA  420
SSGFANSLTF PTTVAAVHQP SFATKSQNSR LPSVTCINDA PRYHFTT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51765.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-173floral homeotic protein APETALA 2
SwissprotB8AMA98e-98AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB58e-98AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2Z7CZQ90.0A0A2Z7CZQ9_9LAMI; Uncharacterized protein
STRINGXP_009606014.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-91AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]