PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50078.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 533aa    MW: 59061.6 Da    PI: 6.5844
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50078.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.11.4e-751485282374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++lL  cA av++++ +++ ++L  l++las +gd+++Rl +y + AL++++++  +s+ +++   ++ +++n +  + +l  f+++sP++++ + ++N
  KZV50078.1 148 EQLLNPCAAAVTARNPSRVLHFLYVLHDLASLSGDANHRLSFYGLCALKHHVSSaPGSSFSASTDGKTFASSNPKFFTDSLIKFNDISPWFRIPNNVTN 246
                 689***************************************************88888898899999999888888888888**************** PP

        GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvak 184
                  aIl+ ++++   + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T+v++++ +          +        ++L +fA+ l+v++++n l   
  KZV50078.1 247 TAILQLLAEQaqpSNLHILDIGVSHGVQWPTLLEELTRRAgGPPPLVRLTVVAPAAMNdlsrntapfaNGPPDYDFSSKLLSFAKDLNVNLQINRLENL 345
                 *******999888999************************55666********98877899988888877788899*******************9888 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklprese 280
                 +l++l+ + ++ + +E l+V+ +++lh+l    + +++ r+++Lk+++slsPk v+++e++  +++ n ++F+++f++ +ey + ++ds++  +    +
  KZV50078.1 346 QLQNLNSQLIKSSAEEILVVCAQFRLHNLT---HGITDDRTKFLKVLRSLSPKGVILCENNtdCSCiNCGDFATGFSRRVEYLWRFLDSTSIAY----K 437
                 *****************************8...77777799******************9944555899*********************7774....6 PP

        GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r + Er++++ e+ +v+ ++g++    +e++ekW +r+++aGF+   ++e++ + ak+llrk++ +++ rve+++g++ l W+++p+ ++S W+
  KZV50078.1 438 GRESEERRMMEAEAAKVLINSGEM----NERKEKWCDRMRHAGFTGDVFGEETIDGAKALLRKYDsNWEIRVEDRDGCVGLLWRGQPVSFCSLWK 528
                 6666666667777999******99....88888********************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.03121507IPR005202Transcription factor GRAS
PfamPF035145.0E-73148528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MPNHISEWIE DSISYFPMFF DDPYDTGDLI GDSWWVEGQN LEQDLIDDSF ITNSSMTSAT  60
LPPAPAPAPA PTDSTISLDS MKKRKLADDL NSMKPRKTTN KRANAQDLGR ESPEQGLVVA  120
RKQGGNKKGS KAAGNGSNGN NKEGRWAEQL LNPCAAAVTA RNPSRVLHFL YVLHDLASLS  180
GDANHRLSFY GLCALKHHVS SAPGSSFSAS TDGKTFASSN PKFFTDSLIK FNDISPWFRI  240
PNNVTNTAIL QLLAEQAQPS NLHILDIGVS HGVQWPTLLE ELTRRAGGPP PLVRLTVVAP  300
AAMNDLSRNT APFANGPPDY DFSSKLLSFA KDLNVNLQIN RLENLQLQNL NSQLIKSSAE  360
EILVVCAQFR LHNLTHGITD DRTKFLKVLR SLSPKGVILC ENNTDCSCIN CGDFATGFSR  420
RVEYLWRFLD STSIAYKGRE SEERRMMEAE AAKVLINSGE MNERKEKWCD RMRHAGFTGD  480
VFGEETIDGA KALLRKYDSN WEIRVEDRDG CVGLLWRGQP VSFCSLWKMD SAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3014452884473Protein SHORT-ROOT
5b3h_B7e-3114452830419Protein SHORT-ROOT
5b3h_E7e-3114452830419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50078.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072582.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2Z7CTM30.0A0A2Z7CTM3_9LAMI; Nodulation-signaling pathway 1 protein-like
STRINGMigut.I01075.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-139GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]