PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46906.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 309aa    MW: 35171.3 Da    PI: 6.4098
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46906.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.91.2e-36181092102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g+sfvv++++ef++++LpkyFkhsnf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
    KZV46906.1  18 FLTKTYHLVDDHTIDDVISWNEDGSSFVVWNQTEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKNLLSDIQ 105
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KZV46906.1 106 RRKI 109
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-5714107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3815107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-3515107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3218107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MARRGGCEST TRSLPTPFLT KTYHLVDDHT IDDVISWNED GSSFVVWNQT EFSRDLLPKY  60
FKHSNFSSFV RQLNTYGFRK VVPDRWEFSN DCFRRGEKNL LSDIQRRKIS TLTPVTATTA  120
PSPAVTPLEV SPSDSGDEQV LSNSDSLIPV REFNGNKAEL IDENERLRKQ NVQLNKELCQ  180
MKNMCHNIYN LISNFSSNNS INGHEEHRRR LSWEENPVKP LDLLPTKETD TTSEMEPSHR  240
GELDVSDMKS AAEELSARLF GVPIGLKRGR EADNGSDLRL QLPGRDIKSE PLDQPSSWLK  300
KSGSRKVCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-251810729129Heat shock factor protein 1
5d5v_B1e-251810729129Heat shock factor protein 1
5d5u_B1e-251810729129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076202.11e-138PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_011076201.11e-138PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A103YJH31e-109A0A103YJH3_CYNCS; Heat shock factor (HSF)-type, DNA-binding
TrEMBLS8CDQ31e-109S8CDQ3_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA09G26510.13e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-78heat shock transcription factor B2A