PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family FAR1
Protein Properties Length: 882aa    MW: 99995.1 Da    PI: 6.8503
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45555.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.14.4e-1665139189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 kfY+eYA+++GF++ +s++++sk +g++t+r+f Cs+  +r++ ++k              C+a+l+++ + ++kw+vtk+++ H+H++
  KZV45555.1  65 KFYEEYARHLGFRTHVSHTNRSKGDGRCTSREFLCSRDQSRKRASEK--------------CEAMLRIEARGQDKWVVTKFVKGHSHAV 139
                 6***********************************99888877666..............**************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-1365139IPR004330FAR1 DNA binding domain
PfamPF105511.4E-20277368IPR018289MULE transposase domain
PROSITE profilePS5096611.115555591IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-9562589IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-8566593IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MDIDLIDVGD ANGGQHRAIM DDGDDDSIEG GEKNAYGHSL VQDEVGVAPE PHMGMEFCSE  60
HAARKFYEEY ARHLGFRTHV SHTNRSKGDG RCTSREFLCS RDQSRKRASE KCEAMLRIEA  120
RGQDKWVVTK FVKGHSHAVI CSSKGQSLRP QKEFNTTAKD VVEIDQSGDV TPSGMMRVSI  180
NGNNVTPEMN HGGTNMPTES NHTNKNFGIS VCAARHPCQK RSLGKASQNL LDYFKKMQAE  240
NPGFYYAIQL DEDNRVANVF WADARSRTAY NYFGDAVIVD TIYLINQYKV PIASFTGINH  300
HGQTILFGCA LLFDESEAAY VWLFKTFLAA MNDRVPVSVT TAKGRIIQAA VARVFPKARH  360
CVNRWNVLRE GHDKMAHVCI SHPNFQVDLY DCLNLTETIE EFESIWASIL DKYDLKRNDW  420
LQSIYSSRRQ WVPAYCRDFF FAAIFPHQQF QTSFFDGYVN QQTTLPLFFR QYESALENSF  480
ERELEADFDT MCSTPVLKTP SPMEKQAANL YTKRIFLKFQ EELVETFAYT ASRIDGDGDT  540
DTYRVAKFED DYKAYIVSLN IAGKTASCSC HMFEYSGILC RHILTVFTVT NILTLPSHYI  600
LKRWTRNAKD GASFDEHFEL RGQESLTKRY NNLCKEAIRY AEAGAIASET YSVAISCLRE  660
GGQKVACVKK DIAKVVRPSS QVTRVNNDEW SASTLNGDMT SLLWPRQDEI KCQFNLNNSC  720
VAGQPIIQKN VSHMTPVSFN RDESYSDSMV VLPCLKSMTW VMENKNLMTE DRIAVINLKL  780
QDYSTSPTGE SVVKFSLSNI TLEPMLRSMA YISEQLSTPA NKVAVINLKL QDSEMITCES  840
EVKFQVSRDT LGAMLRSMAY IREQLCSTVE PKQDNAAKRQ RK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45555.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022883732.10.0protein FAR1-RELATED SEQUENCE 3 isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2Z7CFT10.0A0A2Z7CFT1_9LAMI; Uncharacterized protein
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]