PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family RAV
Protein Properties Length: 361aa    MW: 39957.8 Da    PI: 9.484
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30471.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.3e-1461109155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  KZV30471.1  61 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 109
                 689***9788.8*********3.....5*************************98 PP

2B3101.54.9e-32191293199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +g++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   +++l++ 
  KZV30471.1 191 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSNTKGVLLNFEDMCGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFQRSTGPDKQLYID 289
                 89****************************7777899**************************************************887788888888 PP

                 EE-S CS
          B3  96 vfrk 99 
                 + ++
  KZV30471.1 290 WTSR 293
                 8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-1761117IPR016177DNA-binding domain
PfamPF008477.7E-961109IPR001471AP2/ERF domain
CDDcd000183.93E-2561116No hitNo description
PROSITE profilePS5103220.17862117IPR001471AP2/ERF domain
SMARTSM003802.6E-3062123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-2162117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-41183295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30189289IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-29190279No hitNo description
PROSITE profilePS5086314.452191294IPR003340B3 DNA binding domain
PfamPF023621.3E-28191293IPR003340B3 DNA binding domain
SMARTSM010191.5E-23191294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDAISADESI SDSTSVTPPP STSPAAMTKS PASLCRVGSG ASVIIDLENG IEAESRKLPS  60
SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DTAAQRFRGR DAVTNFKPLS  120
ETEGDRVEAA FLNSHSKAEI VDMLRKHTYN DELEQSRKNH GVNGGNTGTR DGSFSFINGG  180
DTASKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSNTKGVLL NFEDMCGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDVVSFQRST GPDKQLYIDW TSRNNGSLVG  300
SGLVQPGQII RLFGVNIFEA PSRVHTAAPI EDNGSCGAKR MREIELLGLE FRKKQRAIDV  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5918830211126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30471.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070834.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-149RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2Z7B8L40.0A0A2Z7B8L4_9LAMI; Uncharacterized protein
STRINGMigut.E00306.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-146RAV family protein
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]