PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family RAV
Protein Properties Length: 331aa    MW: 37625.2 Da    PI: 8.8842
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29610.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.61.9e-104593155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV    ++g W  +I++      +  r++lg+f +++eAa a++ a+ kl++
  KZV29610.1 45 SRFKGVV-SQQNGHWGTQIYV------NhERIWLGTFKSEQEAAMAYDSAAIKLRN 93
                689***6.55589********......44**********99*************97 PP

2B384.78.3e-27164263190
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k+ltpsdv+k++rlv+pkk+a ++            gg+  e+++l + d+s rsW+++++y+k+s+++v+t+GW++F+k++gL+++D v+F+  ++
  KZV29610.1 164 FEKELTPSDVSKLNRLVIPKKYAVKYfpqisetleekgGGI--EDVELAFFDRSMRSWKFRYCYWKSSQSFVFTRGWNRFAKEKGLRSKDRVIFSIFES 260
                 99**************************9888877765444..889************************************************96554 PP

                 SEE CS
          B3  88 sef 90 
                 +++
  KZV29610.1 261 NNG 263
                 554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1445102IPR016177DNA-binding domain
CDDcd000181.14E-2045103No hitNo description
SMARTSM003806.0E-1646107IPR001471AP2/ERF domain
PfamPF008474.5E-54693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-1646101IPR001471AP2/ERF domain
PROSITE profilePS5103216.87146101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-31161269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-27163275IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-22163261No hitNo description
PROSITE profilePS5086312.689164273IPR003340B3 DNA binding domain
PfamPF023621.3E-23164261IPR003340B3 DNA binding domain
SMARTSM010198.8E-19164271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEPSVVSGT ATTNLSEEVS QISNTTSKQI IPLKNLRHNV SASSSRFKGV VSQQNGHWGT  60
QIYVNHERIW LGTFKSEQEA AMAYDSAAIK LRNGDSYRNF PWTESTIHEP SFQSQFSTES  120
VLSMIKDGSY AAKFSEYLRA QAQCVNSNQP ILTGVTGVKV RQLFEKELTP SDVSKLNRLV  180
IPKKYAVKYF PQISETLEEK GGGIEDVELA FFDRSMRSWK FRYCYWKSSQ SFVFTRGWNR  240
FAKEKGLRSK DRVIFSIFES NNGLPGVRRL SMIDVTYNDG HYNDVEAITK VNEKFDSGDG  300
SIEDKDDTKV RDDNAEKGDK KSFRLFGVQI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2716325613101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29610.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083994.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083995.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083998.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083999.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550901.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550902.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550903.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550904.11e-132AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6885e-96RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2G9HEB31e-119A0A2G9HEB3_9LAMI; Uncharacterized protein
STRINGXP_006445925.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-98RAV family protein